Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CAX3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51860 563 / 0 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT2G38170 548 / 0 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT5G01490 459 / 8e-160 ATCAX4, CAX4 cation exchanger 4 (.1) AT1G55730 324 / 6e-107 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 321 / 8e-106 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 306 / 1e-99 ATCAX6 cation exchanger 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G115500 [exp] 751 / 0 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.009G045800 [exp] 530 / 0 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G251200 [exp] 525 / 0 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.001G469800 [exp] 321 / 1e-105 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.011G166900 [exp] 313 / 8e-103 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.010G249200 [exp] 306 / 2e-100 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027791 [exp] 584 / 0 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 562 / 0 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10035507 [exp] 558 / 0 AT3G51860 579 / 0.0 cation exchanger 3 (.1) Lus10002490 [exp] 556 / 0 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10040674 [exp] 468 / 2e-163 AT2G38170 511 / 2e-180 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10027136 [exp] 308 / 3e-100 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10033396 [exp] 306 / 1e-98 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10034853 [exp] 308 / 4e-98 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10018231 [exp] 291 / 8e-95 AT3G51860 365 / 1e-123 cation exchanger 3 (.1) Lus10006068 [exp] 290 / 1e-89 AT3G13320 516 / 1e-176 cation exchanger 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Potri.006G099900.1 pacid=42770015 polypeptide=Potri.006G099900.1.p locus=Potri.006G099900 ID=Potri.006G099900.1.v4.1 annot-version=v4.1 ATGGCTTCATTGCAAGAACCATGGCTTTTGGAGAATGGCAACCTTAAGGGCTCAAGCAAGGAGATGAGACATGGAAGGACTGCACACAACATGTCATCCT CATCATTGCGCAAAAAATCAGACCTCACTCTTGTGTCAAAAGTTAAATGTGGAATGCTTAGACTCTTGTTAACTAATCTTCAAGAGGTCATTTTGGGGAC AAAACTTTCAGTTCTTTTTCCTGCCATTCCACTGGCCATTGCTGCTCAATGCTATGGCTTTGGGAGACCCTGGATTTTTGCTCTGAGCTTACTTGGACTG ACCCCACTTGCCGAACGTATCAGCTTTATAACAGAGCAAATTGCTTATTACACCGGCCCAACAGTGGGAGGGCTACTGAATGCAACATGCGGCAATGCTA CAGAACTGATAATAGCAATTTTTGCACTGTGGCAACACAAAGTAGAAGTGGTGAAATATTCACTCTTGGGTTCCATACTATCAAACCTACTATTAGTTCT TGGCACCTCGCTCTTCTGTGGTGGCATTGCCAACCTTGGAAAGGAACAAAAATATGATAGGAGACAAGCTGATGTGAACGCACTGCTTCTGCTTTTGGCA TTGCTGTGCCATATGTTGCCACTTTTGTTTCGGATTTCTGGAGCCTCCGCTTCCCTCACTGCAGTCCCAACACTGCAGTTGTCGAGAGCAAGCAGCATTG TAATGCTGGTTGCATACATTACATACATCATTTTTCAGTTAGTGACACACCGACAATTATTTGAAGCACAAGAGGATTCAGACGAAGATGATGGTGATGT GAATTCAGAAGAAACACCTGTGATAGGCTTCCGGAGTGGAATAGTTTGGCTGGTTGGAATGACTGCTGTCGTAGCCTTGTTGTCAGAATATGTTGTGGGG ACAATCGAGGATGCTTCAGAATCTTGGGGCCTTTCTGTCAGCTTCATTAGCATTATCTTGCTGCCAATTGTTGGGAATGCGGCTGAACATGCTGGAGCAG TCATTTTTGCTTTTAAAAACAAGTTGGATATATCTTTGGGTGTTGCACTAGGTTCTGCTACTCAAATTTCTTTGTTTGTGGTTCCACTCTGTGTAGTTGT TTCTTGGATGTTGGGCATTAATATGGATCTTAATTTCAATCTCCTTGAGACTGGTGCTCTTGCTATATCAATAATCACCACAGCCTTCACCTTACAGGAT GGTACTTCTCATTACCTGAAAGGATTGACTCTATTGCTGTGCTACGTTGTTATTGGAGCATGCTTTTTCGTATCCAAAACACCACTGAACCACGGAAACG TCATCAACTTGGGTGTCAATTCCGAGGTCGGAGTCATCACAGCTTAA
AA sequence Show only first row Show all	>Potri.006G099900.1 pacid=42770015 polypeptide=Potri.006G099900.1.p locus=Potri.006G099900 ID=Potri.006G099900.1.v4.1 annot-version=v4.1 MASLQEPWLLENGNLKGSSKEMRHGRTAHNMSSSSLRKKSDLTLVSKVKCGMLRLLLTNLQEVILGTKLSVLFPAIPLAIAAQCYGFGRPWIFALSLLGL TPLAERISFITEQIAYYTGPTVGGLLNATCGNATELIIAIFALWQHKVEVVKYSLLGSILSNLLLVLGTSLFCGGIANLGKEQKYDRRQADVNALLLLLA LLCHMLPLLFRISGASASLTAVPTLQLSRASSIVMLVAYITYIIFQLVTHRQLFEAQEDSDEDDGDVNSEETPVIGFRSGIVWLVGMTAVVALLSEYVVG TIEDASESWGLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQISLFVVPLCVVVSWMLGINMDLNFNLLETGALAISIITTAFTLQD GTSHYLKGLTLLLCYVVIGACFFVSKTPLNHGNVINLGVNSEVGVITA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.006G099900 [exp]	0	1	CAX3.1
AT1G48450			Protein of unknown function (D...		Potri.012G042400 [exp]	9.74	0.9170
AT2G37660			NAD(P)-binding Rossmann-fold s...		Potri.006G086800 [exp]	9.79	0.9057
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.011G131300 [exp]	10.00	0.8907
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.018G089100 [exp]	12.72	0.9136
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.010G078300 [exp]	14.96	0.8787	Pt-IAA14.2
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.008G115800 [exp]	19.49	0.8361
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.004G229600 [exp]	24.49	0.8954
AT3G25920		RPL15	ribosomal protein L15 (.1)		Potri.008G121100 [exp]	24.73	0.9120
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	31.30	0.8811
AT4G01310			Ribosomal L5P family protein (...		Potri.002G154600 [exp]	32.40	0.9099

Compare expression of checked genes

Potri.006G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.