Plant FIBer expression Database

Potri.006G100100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01470 338 / 4e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
AT2G26810 50 / 3e-07 Putative methyltransferase family protein (.1.2.3)
AT4G35987 43 / 0.0001 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G109000
[exp]
52 / 9e-08 AT1G63855 261 / 5e-89 Putative methyltransferase family protein (.1.2.3)
Potri.009G068400
[exp]
47 / 3e-06 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3)
Potri.017G017000
[exp]
40 / 0.001 AT5G44170 316 / 3e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002489
[exp]
354 / 3e-124 AT5G01470 343 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Lus10004816
[exp]
352 / 7e-122 AT5G01470 342 / 6e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Lus10041869
[exp]
52 / 1e-07 AT1G63855 255 / 8e-87 Putative methyltransferase family protein (.1.2.3)
Lus10028415
[exp]
47 / 5e-06 AT1G63855 248 / 2e-84 Putative methyltransferase family protein (.1.2.3)
Lus10015166
[exp]
41 / 0.0005 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10026822
[exp]
41 / 0.0007 AT2G26810 267 / 5e-87 Putative methyltransferase family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF10294 Methyltransf_16 Lysine methyltransferase
Representative CDS sequence
>Potri.006G100100.1 pacid=42770181 polypeptide=Potri.006G100100.1.p locus=Potri.006G100100 ID=Potri.006G100100.1.v4.1 annot-version=v4.1
ATGGACATAGCTCTCTTCTCTCCTTCTTCACTTTTCGCGGACGATGATGACTTCTCTTCTGAGGAAACAAAGGAGACCCAACAGAATCATGTAGAGAGGA
GGCACAGTTTTCCTGGAATGGAGTTGCTCATTAGAGAATTCTCTTTTCACAAATTGAATGCTAATTTGCTCTGGCCAGGGACATTTGCATTTGCAGAATG
GTTAGTTCAGAACAGGCCATTGGTTGAAGGGCGGCATTGCATTGAATTGGGCAGTGGCACTGGAGCTTTGGCCATTTTTCTTCGTAAATCATTCCATCTT
GACATCACAACATCAGACTATAATGATCAGGAAATTGAAGAAAACATAGCTCACAATTGCAGAGTGAATGGAGTCACACCAGTCCTTCCTCACATTAGGC
ATTCTTGGGGGGACACCTTTCCAGCTGCTGATCCTGACTGGGATCTGGTTATAGCTAGTGATATTTTACTGTATGTGAAACAGTATCCAAACTTGATAAA
AACTCTTTCCTTTCTCCTCAAATCTTACAAGCTGAAAAATGACAGAGCAGGCTCTATCATGGAAAATGAGCAGAATGGAGGAACACACAATATCGGGTTG
CCTAGGCCAGCTTTTTTAATGAGTTGGAGACGTAGAATTGGCAAGGAGGACGAATCTCTCTTCTTTGATGGTTGTGAGAGCGCCGGGTTACAAGTGGAGC
ATCTTGGATCCCGTGTTTACTGTATCACACCCAAAGATCAAGTGTCAGGATACCAAATAGAGGTAACCAGGTGA
AA sequence
>Potri.006G100100.1 pacid=42770181 polypeptide=Potri.006G100100.1.p locus=Potri.006G100100 ID=Potri.006G100100.1.v4.1 annot-version=v4.1
MDIALFSPSSLFADDDDFSSEETKETQQNHVERRHSFPGMELLIREFSFHKLNANLLWPGTFAFAEWLVQNRPLVEGRHCIELGSGTGALAIFLRKSFHL
DITTSDYNDQEIEENIAHNCRVNGVTPVLPHIRHSWGDTFPAADPDWDLVIASDILLYVKQYPNLIKTLSFLLKSYKLKNDRAGSIMENEQNGGTHNIGL
PRPAFLMSWRRRIGKEDESLFFDGCESAGLQVEHLGSRVYCITPKDQVSGYQIEVTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G01470 S-adenosyl-L-methionine-depend... Potri.006G100100
[exp]
0 1
AT1G15220 ATCCMH cytochrome c biogenesis protei... Potri.003G052000
[exp]
1.41 0.8100
AT1G76860 Small nuclear ribonucleoprotei... Potri.005G191600
[exp]
5.47 0.7846
AT5G53045 unknown protein Potri.015G011500
[exp]
9.79 0.7317
AT5G60390 GTP binding Elongation factor ... Potri.010G218600
[exp]
14.69 0.7613
AT1G29150 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE... Potri.010G164200
[exp]
19.41 0.7364 ATS9.1
AT1G03330 Small nuclear ribonucleoprotei... Potri.004G219000
[exp]
28.24 0.7399
AT3G13920 RH4, TIF4A1, EI... eukaryotic translation initiat... Potri.018G061050
[exp]
29.24 0.7485
AT3G57280 Transmembrane proteins 14C (.1... Potri.001G139800
[exp]
31.49 0.7969
AT2G35790 unknown protein Potri.010G219400
[exp]
32.64 0.7506
AT4G37090 unknown protein Potri.007G034600
[exp]
36.18 0.7699

Potri.006G100100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.