Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01460 825 / 0 LMBR1-like membrane protein (.1) AT3G08930 821 / 0 LMBR1-like membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116200 [exp] 841 / 0 AT5G01460 848 / 0.0 LMBR1-like membrane protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027794 [exp] 824 / 0 AT5G01460 921 / 0.0 LMBR1-like membrane protein (.1) Lus10035505 [exp] 821 / 0 AT5G01460 917 / 0.0 LMBR1-like membrane protein (.1) Lus10004814 [exp] 733 / 0 AT5G01460 797 / 0.0 LMBR1-like membrane protein (.1) Lus10002488 [exp] 246 / 2e-77 AT5G01460 286 / 2e-93 LMBR1-like membrane protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04791 [poplar] [flax] LMBR1 LMBR1-like membrane protein
Representative CDS sequence Show only first row Show all	>Potri.006G100200.1 pacid=42770290 polypeptide=Potri.006G100200.1.p locus=Potri.006G100200 ID=Potri.006G100200.1.v4.1 annot-version=v4.1 ATGGGAGATTTCAATTTAGCACTGGTAATCGTAGCTATAGTAGTATGCATCATCGTGCTCTTGTTCAATGTCTACCTCCTAGTCAATTACCAGCATCCGG ACGACAAGAATCAAGCTTATTTTCCCAAATTCGTTGTCGTTTTTGGCCTCTCCGTTGCCGCTATCTCGATTTTGATGTTACCGGCTGACGTAGCCAACCG GCAAGCTTGTCGTCACGCGATTTATAATGGCGCGTGCAATCTTACCTTGCCAATGAAGGATCTGTGGATTGCTGTATACATTGTTGATGCTGTGCTTGTT TTTTTCATTATTCCTTTTGCGATGTTTTACTATGAAGGGGATCAGGACAAGAGTGTTGCTAAAAGAATTAAAAGTGCTTTATTGTGGGTTATAACAACGG CGATTGTGTGTGGTCTTGTGCTCGGCATTTTATACGGGGTTATTGGAAAAGTTGACTTCACTGTTAGGCATCTCTCTTCGACCACAACTACTTTTCCGAG TACTTGGGATTTCTCTGGCAGTCAACCATGTATTGGAAGTGGCCCACACCAGTGCTCTGCATATCTTGCAAATGCTTCCTCAGAGAAAACTTGGACCATG CGCGCCACATTTCCAGAATATGTTGTTGCTCTTGCTACAATTGTTGGATCTGTACTCTTTGCGATATTTGGTGGTGTTGGGATTGCTTGTTTGCCACTGG GACTTATCTTCTCTTTCATCAGGCGTCCAAAGGCTGTTATCACGCGGTCACAGTATATTAAGGAAGCAACTGAATTTGGTAAAAAAGCGAGAGAACTGAA GAAAGCAGCTGATGCACTCCATCAGGAGGAAAGAAGTGGTTCCAAGGGTAGAAAATGGCGTAAAAATGTCAAGTCAGTAGAAAAGGAATTGCTTCAGCTA GAAGAAGATGTAAAGCTGTTAGAAGAGATGTACCCGCAAGGGGAGAAGGCTGAGACAGCCTGGGCTTTGACGGTTCTTGGCTACTTGGCAAAACTTGTGT TGGGAATCTTAGGGTTGATTGTTTCGGTGGCTTGGGTTGCTCATATTATCATATACCTGTTGGTTGATCCACCACTTTCTCCTTTCCTAAATGAGGTCTT CATCAAGTTGGATGACATATGGGGTCTTCTGGGTACTGTGGCGTTTGCTTTCTTCTGCTTCTACCTTCTGCTTGCAGTCATAGCTGGGGCAATGATGCTG GGCCTGAGATTAGTTTTCATTACGATTCATCCCATGAAGTGGGGAGCCACTCTAATGAACTCCTTTCTTTTCAATGTGGGACTCATTCTCCTATGCTCCA TTAGCGTGATTCAGTTCTGTGCCACTGCATTTGGCTACTATGCCCAAGCAACTGCAGCCCAAGAAATTTTCGGTCACACATTGCAGTCACTCCGTGGAAT TAAATATTTGTACAAGTATAACGTGTTCCAAATATCATTTGTTGTTCTGGCGGGTTTGACTTTTGTTTATTATGCTGCCTTTGGATGGAGAAGAAAAAAG CGTAGTGGCAGGTTCCAACTTTCCTCATAA
AA sequence Show only first row Show all	>Potri.006G100200.1 pacid=42770290 polypeptide=Potri.006G100200.1.p locus=Potri.006G100200 ID=Potri.006G100200.1.v4.1 annot-version=v4.1 MGDFNLALVIVAIVVCIIVLLFNVYLLVNYQHPDDKNQAYFPKFVVVFGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWIAVYIVDAVLV FFIIPFAMFYYEGDQDKSVAKRIKSALLWVITTAIVCGLVLGILYGVIGKVDFTVRHLSSTTTTFPSTWDFSGSQPCIGSGPHQCSAYLANASSEKTWTM RATFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEFGKKARELKKAADALHQEERSGSKGRKWRKNVKSVEKELLQL EEDVKLLEEMYPQGEKAETAWALTVLGYLAKLVLGILGLIVSVAWVAHIIIYLLVDPPLSPFLNEVFIKLDDIWGLLGTVAFAFFCFYLLLAVIAGAMML GLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQISFVVLAGLTFVYYAAFGWRRKK RSGRFQLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01460			LMBR1-like membrane protein (....		Potri.006G100200 [exp]	0	1
AT4G35335			Nucleotide-sugar transporter f...		Potri.016G113200 [exp]	1.41	0.9417
AT1G09160			Protein phosphatase 2C family ...		Potri.005G021200 [exp]	2.23	0.9232
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.010G181900 [exp]	4.12	0.9091	ASNAP.3
AT2G20840			Secretory carrier membrane pro...		Potri.013G144700 [exp]	5.47	0.9279
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.014G044000 [exp]	5.65	0.9269
AT5G21070			unknown protein		Potri.004G196600 [exp]	6.63	0.9378
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Potri.006G218400 [exp]	9.16	0.9056
AT1G74340		DPMS2, DPMS	dolichol phosphate mannose syn...		Potri.001G138100 [exp]	10.00	0.9022
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.011G162500 [exp]	12.04	0.9003	Pt-TUB4.1
AT4G29340		PRF4	profilin 4 (.1)		Potri.006G235200 [exp]	14.69	0.9226	Pt-PRO1.4

Compare expression of checked genes

Potri.006G100200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.