Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4) AT5G01450 323 / 2e-106 RING/U-box superfamily protein (.1) AT2G38220 248 / 1e-77 RING/U-box superfamily protein (.1) AT2G38195 243 / 6e-76 RING/U-box superfamily protein (.1.2) AT4G24204 79 / 7e-17 RING/U-box superfamily protein (.1.2.3) AT3G23280 63 / 2e-10 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G14365 58 / 6e-09 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT3G53410 49 / 3e-06 RING/U-box superfamily protein (.1) AT1G59560 49 / 5e-06 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT1G18470 49 / 7e-06 Transmembrane Fragile-X-F-associated protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116300 [exp] 698 / 0 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.001G251900 [exp] 410 / 1e-139 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1) Potri.014G020900 [exp] 164 / 1e-45 AT5G01450 116 / 9e-29 RING/U-box superfamily protein (.1) Potri.007G050500 [exp] 73 / 7e-15 AT4G24204 81 / 4e-20 RING/U-box superfamily protein (.1.2.3) Potri.005G225300 [exp] 62 / 3e-10 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.018G011300 [exp] 58 / 3e-09 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070750 [exp] 58 / 8e-09 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070800 [exp] 54 / 2e-07 AT3G23280 502 / 2e-176 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.014G138000 [exp] 53 / 2e-07 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002487 [exp] 451 / 1e-155 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1) Lus10004813 [exp] 417 / 2e-142 AT2G38185 309 / 2e-100 RING/U-box superfamily protein (.1.2.3.4) Lus10010392 [exp] 65 / 5e-12 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10003551 [exp] 58 / 3e-09 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009035 [exp] 59 / 4e-09 AT3G23280 524 / 0.0 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009674 [exp] 57 / 2e-08 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10038656 [exp] 51 / 2e-06 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10037928 [exp] 51 / 2e-06 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10027994 [exp] 50 / 2e-06 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10035335 [exp] 47 / 2e-06 AT4G22250 114 / 4e-33 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) CL0229 [poplar] [flax] PF16040 [poplar] [flax] DUF4792 Domain of unknown function (DUF4792) CL0229 [poplar] [flax] PF16041 [poplar] [flax] DUF4793 Domain of unknown function (DUF4793)
Representative CDS sequence Show only first row Show all	>Potri.006G100400.1 pacid=42769579 polypeptide=Potri.006G100400.1.p locus=Potri.006G100400 ID=Potri.006G100400.1.v4.1 annot-version=v4.1 ATGGCACAACCAGGTCAAATTTCAGTTTCTTCTAGGGATTATTCCGCTGCTGCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAATCACGCTTCTTTTC CAGTCCACGAAGAAGATAATCAACGGTTTCGTCAAATTGAGTATAGACAGCCAGAGATAGAGTATCTGCAACACCAATACATTGACCTTTCCCACCGTGG AAATTATTTTGCGTTTGATGATTTATCTGCTATCAGAGATTGCACGTGGTTTTGTGTCGTCGTGGTTCTCACATTCTGCTTCTTTGTGTCCATGACTTTG ATTTTGGGGGTTTATGGTTCAATGAGGCTAACCCTAGGACCGAAATGCTCGATTCTTTTACCACCTAATCCCTTATTTGTGCAGTCTATAAAGGTGGAAC AGTTGTATGATACTAATCCGGGGCTGATGCTATATGGGTTTTCTAAACCTCCTCCGCTTGATGTTGTACGGACCTGGTCTAGAACTCTTGATGTCTCTGT TCCTGCCGATTCTCACAAGGACTTCGTATATTTTCTGAATGAGGGATCTCAAATAAATATCTCATACAGGGTGAACTCCCCGAGCTCCTCAGTTTTCCTT GTAATTGCACAAGGGAATGAAGGCCTTTCTCAATGGCTTGAGGATCCAACTTATCCAAACACCACTTTATCATGGAATGTCATTCAAGGAAGTGGTTTTG TCCAACAGAGTATATTGACCTCTGCAAGCTACCATATTGCAGTGGGTAACTTGAACTCAGAGAAAGTAGAGGTTCAGTTAGCCATCAGAGTAAGATCTTT CCAATACAATACAACCAAAGCTTACTACAAATGTACATTTACTGATGGCAAGTGTAGTTTGAACATTATGTTTCCCAATGGAAATGTTGCTGTCTTAAAC TCTTTCGGTCCAGAACAGGGTTCAGAAAGTGACGAGTGGAATGTCAAAGTCTCCTATGTACCAAGATGGGCCACATATATTGTCGGCATAGGTGGAATGA CAGTTCTCATACTAGCGGCATTCAACTTCTTGAACATGTTTCAATGCATTCGTGAAGATGGAACCAGAATTCTGTTTGGAGAGGTAGAAGCAGAGAGAGC CCCCTTGCTTTCATGTAAAGATGATGACCTTTCAAGCTGGGGCTCATCTTATGATTCTGTCTCAAACGATGAGGAGGATCTTGAAGATTTTCTTGCAGCT GGTTCCCTTGAAGGGAAATCAAGAGATGGTGAAAATGGCAATAATACCCGTCGTCTTTGTGCAATTTGCTTTGATGCTCCGAGGGAATGTTTCTTCCTCC CATGTGGGCACCGTGTTGCTTGTTTTGCATGTGGAACAAGGATAGCAGAAGCTGATGGTACTTGCCCTATATGTCGCAGGAATTTGAAGAAGGTGAGGAA GATTTTTACAGTTTAA
AA sequence Show only first row Show all	>Potri.006G100400.1 pacid=42769579 polypeptide=Potri.006G100400.1.p locus=Potri.006G100400 ID=Potri.006G100400.1.v4.1 annot-version=v4.1 MAQPGQISVSSRDYSAAASSSSSSSSSSNHASFPVHEEDNQRFRQIEYRQPEIEYLQHQYIDLSHRGNYFAFDDLSAIRDCTWFCVVVVLTFCFFVSMTL ILGVYGSMRLTLGPKCSILLPPNPLFVQSIKVEQLYDTNPGLMLYGFSKPPPLDVVRTWSRTLDVSVPADSHKDFVYFLNEGSQINISYRVNSPSSSVFL VIAQGNEGLSQWLEDPTYPNTTLSWNVIQGSGFVQQSILTSASYHIAVGNLNSEKVEVQLAIRVRSFQYNTTKAYYKCTFTDGKCSLNIMFPNGNVAVLN SFGPEQGSESDEWNVKVSYVPRWATYIVGIGGMTVLILAAFNFLNMFQCIREDGTRILFGEVEAERAPLLSCKDDDLSSWGSSYDSVSNDEEDLEDFLAA GSLEGKSRDGENGNNTRRLCAICFDAPRECFFLPCGHRVACFACGTRIAEADGTCPICRRNLKKVRKIFTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38185			RING/U-box superfamily protein...		Potri.006G100400 [exp]	0	1
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.008G125700 [exp]	2.00	0.8549	RHA2.1
AT1G48910		YUC10	YUCCA 10, Flavin-containing mo...		Potri.002G207400 [exp]	2.44	0.8680
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.017G128900 [exp]	5.19	0.8349	Pt-MYB.42,MYB181
AT3G21690			MATE efflux family protein (.1...		Potri.011G002500 [exp]	10.00	0.8221
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.001G369100 [exp]	12.40	0.8157	ATCSLE1.1
AT5G16290		VAT1	VALINE-TOLERANT 1 (.1.2)		Potri.008G078800 [exp]	14.83	0.7514
AT2G22960			alpha/beta-Hydrolases superfam...		Potri.001G291450 [exp]	16.24	0.8158
AT1G31690			Copper amine oxidase family pr...		Potri.008G151900 [exp]	17.23	0.8095	DAO.3
AT4G27870			Vacuolar iron transporter (VIT...		Potri.012G004000 [exp]	17.32	0.7901
AT2G47115			unknown protein		Potri.014G115200 [exp]	18.73	0.8147

Compare expression of checked genes

Potri.006G100400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.