Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PDX1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01410 538 / 0 PDX1, ATPDX1.3, RSR4 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) AT2G38230 514 / 0 ATPDX1.1 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.1, pyridoxine biosynthesis 1.1 (.1) AT3G16050 367 / 5e-128 A37, ATPDX1.2 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) AT2G38210 137 / 6e-41 PDX1L4 putative PDX1-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116400 [exp] 556 / 0 AT5G01410 532 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Potri.001G182100 [exp] 389 / 9e-137 AT3G16050 483 / 9e-174 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004812 [exp] 536 / 0 AT5G01410 592 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10038318 [exp] 522 / 0 AT5G01410 578 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10036181 [exp] 510 / 0 AT5G01410 566 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10002486 [exp] 342 / 2e-119 AT5G01410 395 / 1e-140 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10011450 [exp] 296 / 7e-101 AT3G16050 372 / 9e-131 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) Lus10037545 [exp] 288 / 8e-98 AT3G16050 370 / 5e-130 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01680 [poplar] [flax] SOR_SNZ SOR/SNZ family
Representative CDS sequence Show only first row Show all	>Potri.006G100500.2 pacid=42767250 polypeptide=Potri.006G100500.2.p locus=Potri.006G100500 ID=Potri.006G100500.2.v4.1 annot-version=v4.1 ATGGCAGGAACCGGAGTTGTGGCTGTCTACGGCAATGGAACAATAACAGAAACCAAAAAATCCCCATTCTCCGTTAAGGTAGGCCTAGCTCAAATGCTCA GAGGCGGGGTCATAATGGACGTGGTCACCGCTGAACAAGCCCGTATAGCCGAAGAAGCCGGAGCTTGCGCCGTCATGGCATTAGAACGAGTCCCCGCCGA CATCCGTGCACAAGGTGGTGTGGCACGCATGAGCGACCCTCAGCTCATCAAAGAAATAAAACAAGCAGTGACCATCCCTGTCATGGCGAAAGCCCGAATC GGGCATTTCGTCGAAGCCCAAATCCTTGAAGCGATTGGTGTCGATTATGTTGACGAATCCGAGGTTCTTACACTGGCTGATGAAGATAATCACATTAACA AACATAACTTCCGCATCCCTTTTGTTTGCGGATGCCGGAATTTGGGTGAGGCCTTGAGGAGGATAAGGGAAGGGGCGGCAATGATTAGGACTAAAGGCGA GGCGGGCACGGGGAACGTTATTGAAGCTGTTAGGCATGTTAGGTCTGTGATGGGGGATATAAGGATGTTGAGAAATATGGATGATGATGAGGTTTTTACC TTTGCAAAGAAGATTGCTGCGCCTTATGATTTGGTTATGCAGACAAAGCAGCTTGGGAGGTTGCCTGTTGTGCAATTCGCGGCGGGTGGAGTGGCTACTC CTGCTGATGCAGCGTTGATGATGCAGTTGGGATGCGATGGGGTGTTTGTAGGGTCTGGGGTTTTTAAGAGTGGGGATCCGGTTAAGAGGGGGAGAGCTAT CGTGCAGGCTGTTACCCATTATAGTGATCCTGAGCTGCTGGCTGAGGTGAGTTGTGGGCTTGGTGAGGCTATGGTCGGGCTTAATTTGAATGATAAGAAG GTGGAGAGGTTTGCTAGTCGGTCGGATTAG
AA sequence Show only first row Show all	>Potri.006G100500.2 pacid=42767250 polypeptide=Potri.006G100500.2.p locus=Potri.006G100500 ID=Potri.006G100500.2.v4.1 annot-version=v4.1 MAGTGVVAVYGNGTITETKKSPFSVKVGLAQMLRGGVIMDVVTAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARI GHFVEAQILEAIGVDYVDESEVLTLADEDNHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRHVRSVMGDIRMLRNMDDDEVFT FAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPVKRGRAIVQAVTHYSDPELLAEVSCGLGEAMVGLNLNDKK VERFASRSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Potri.006G100500 [exp]	0	1	Pt-PDX1.1
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.006G101500 [exp]	8.00	0.9288	FAD3.2
AT3G56140			Protein of unknown function (D...		Potri.008G074300 [exp]	9.21	0.9287
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079600 [exp]	11.22	0.9300
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.008G029700 [exp]	13.41	0.9221
AT2G33450			Ribosomal L28 family (.1)		Potri.010G068500 [exp]	14.24	0.9320
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.008G171000 [exp]	14.49	0.9264	PGR5.2
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.001G380500 [exp]	17.74	0.9247
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.001G253300 [exp]	19.13	0.9295	Pt-AGT.2
AT2G20830			transferases;folic acid bindin...		Potri.013G145800 [exp]	22.58	0.9044
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.009G053300 [exp]	26.98	0.9207

Compare expression of checked genes

Potri.006G100500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.