Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05600 463 / 6e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 453 / 1e-159 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 451 / 2e-159 ATJRG21 jasmonate-regulated gene 21 (.1) AT2G38240 446 / 1e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G22880 257 / 3e-83 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT1G17020 239 / 2e-76 ATSRG1, SRG1 senescence-related gene 1 (.1) AT3G21420 237 / 2e-75 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G54000 229 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 229 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 228 / 5e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117100 [exp] 663 / 0 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 623 / 0 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 506 / 0 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 496 / 2e-177 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 253 / 2e-81 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G119100 [exp] 250 / 1e-80 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.001G382400 [exp] 250 / 1e-80 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 249 / 2e-80 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G451900 [exp] 246 / 5e-79 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005037 [exp] 506 / 0 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 500 / 4e-179 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004387 [exp] 442 / 9e-156 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10027807 [exp] 357 / 4e-123 AT5G05600 330 / 1e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040112 [exp] 247 / 3e-79 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10030995 [exp] 245 / 2e-78 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10022292 [exp] 244 / 2e-78 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10011979 [exp] 243 / 8e-78 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10030934 [exp] 243 / 1e-77 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10028068 [exp] 242 / 1e-77 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.006G101100.1 pacid=42770526 polypeptide=Potri.006G101100.1.p locus=Potri.006G101100 ID=Potri.006G101100.1.v4.1 annot-version=v4.1 ATGATGAACTGCTTGCAGAGTTGGCCTGAACCTGTGGTTAGAGTCCAATCTTTAGCAGCAAGTGGTATCCGGGCAATCCCAGAGCGTTATATTAAGCCAC CATCCCATAGACCCTTATCAAAAAATGACTTTTCACCACCTCAAGAGGTAAACATTCCTGTTATTGATTTCCAAAACGTTTTCTCTGACGACCAACGCCT CCGTGACGAGGCCCTCCGTGATATCTACAGTGCTTGCCATGAATGGGGGTTCTTTCAAGTAGTGAACCATGGTGTTAGCCATGAACTGATGAAGAGGACT AGTGAGGTTTGGCGAGAGTTCTTCAACTTGCCAGTAGAAGTGAAGCAGGAGTATGCTAACACTCCTGCTACGTATGAGGGGTATGGTAGTCGGTTAGGGG TGGAGAAGGGGGCGATACTTGATTGGAGTGATTATTTCTTCCTTAATTATATGCCTGTTTCTCTCAGAAACCAAAACAAGTGGCCTGCAACCCCAGCTTC TTGCAGGGAATTGGTAGCTGAGTATGGCAGTGAAGTGGTTAAACTTTGTGGAAAGTTGATGAAGGTATTCTCCATGAACCTTGGTCTGGAAGAGGACTCC CTCCTTAACGCTTTTGGTGGAGAAGAAAACATTGGGGCAGGCTTGAGGGTGAATTACTACCCCAAGTGTCCCCAGCCAGACCTTACACTAGGTCTCTCCC CACACTCTGACCCTGGTGGAATGACCCTTCTCCTGCCTGATGAAAATGTGGCTGGCCTACAAGTCTGTAGGAAGGGCAGTTGGCTCACTGTTAAGCCGAT CCCAAATGCCTTCATTATCAACATAGGAGATCAAATCCAGGTACTGAGCAACGCCATCTATCAGAGTGTGGAGCACAGGGTTATTGTGAATTCTAATAGT GATAGAGTCTCTCTTGCCCTTTTCTATAACCCGAAGAGCGACTCGCTCATTGAACCATCCAAGGAGCTTGTGTCCGATGACCGGCCAGCTCTCTACCCAC CGATGAGATTTGATGAATACAGACTTTACGTTAGGACAAAGGGTCTCTGCGGCAAGGAACAGGTTGAATCCTTAATAATATCCTAG
AA sequence Show only first row Show all	>Potri.006G101100.1 pacid=42770526 polypeptide=Potri.006G101100.1.p locus=Potri.006G101100 ID=Potri.006G101100.1.v4.1 annot-version=v4.1 MMNCLQSWPEPVVRVQSLAASGIRAIPERYIKPPSHRPLSKNDFSPPQEVNIPVIDFQNVFSDDQRLRDEALRDIYSACHEWGFFQVVNHGVSHELMKRT SEVWREFFNLPVEVKQEYANTPATYEGYGSRLGVEKGAILDWSDYFFLNYMPVSLRNQNKWPATPASCRELVAEYGSEVVKLCGKLMKVFSMNLGLEEDS LLNAFGGEENIGAGLRVNYYPKCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVCRKGSWLTVKPIPNAFIINIGDQIQVLSNAIYQSVEHRVIVNSNS DRVSLALFYNPKSDSLIEPSKELVSDDRPALYPPMRFDEYRLYVRTKGLCGKEQVESLIIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101100 [exp]	0	1
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101200 [exp]	3.46	0.9996
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.008G118400 [exp]	5.29	0.9994
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.003G196700 [exp]	5.47	0.9918
					Potri.007G014501 [exp]	7.21	0.9993
					Potri.017G120650 [exp]	8.06	0.9993
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067133 [exp]	8.83	0.9993
AT5G15720		GLIP7	GDSL-motif lipase 7 (.1)		Potri.017G102100 [exp]	9.16	0.9927
					Potri.010G113450 [exp]	9.48	0.9840
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067100 [exp]	11.40	0.9993
					Potri.006G038300 [exp]	12.64	0.9912

Compare expression of checked genes

Potri.006G101100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.