Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51850 977 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT1G74740 739 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT5G12480 728 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT1G18890 722 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT5G19450 716 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT3G57530 704 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 681 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT2G31500 625 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 587 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 583 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117200 [exp] 1040 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.012G071700 [exp] 758 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.015G066200 [exp] 757 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G054600 [exp] 743 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.001G257100 [exp] 726 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.006G052900 [exp] 724 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.009G052700 [exp] 717 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.007G127000 [exp] 634 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.009G069200 [exp] 577 / 0 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004807 [exp] 996 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 986 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 978 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10005038 [exp] 801 / 0 AT3G51850 793 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10009947 [exp] 723 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10027361 [exp] 723 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10008631 [exp] 715 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10014907 [exp] 714 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10042370 [exp] 709 / 0 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10026742 [exp] 682 / 0 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.006G101300.3 pacid=42769960 polypeptide=Potri.006G101300.3.p locus=Potri.006G101300 ID=Potri.006G101300.3.v4.1 annot-version=v4.1 ATGGGGAATTGTTGCAGATCTCCGGCCGCCGTAGCTAGAGAAGATGTGAAATCGAGCTTCTCCGGTCACGATCACGGAAAGAAAGACAACACAGCTAAAA AAACACCGCAACCAATCACAGTCCTCACTGGCTTCCCCAAGGAGAACATCGAAGAGCGCTATTTAGTAGATCGTGAGCTAGGTCGGGGAGAATTTGGCGT AACGTATCTGTGTATAGAGCGAGACTCGAGAGAGTTACTTGCCTGTAAGAGTATTTCGAAGAGGAAGTTGAGGACTGCTGTGGATATTGAAGATGTCAGA CGAGAAGTAGCGATAATGAAGCATTTGCCGAAGAGTTCGAGTATTGTGAGCTTGAAAGAAGCTTGTGAGGATGATAATGCGGTGCATTTGGTTATGGAGT TGTGTGAAGGAGGGGAATTGTTTGATAGAATTGTTGCTAGAGGTCATTATACTGAAAGAGCCGCCGCCGCAGTGACTAGAACGATTGTTGAGGTTGTGCA GTTGTGTCATAAGCATGGTGTGATTCATAGGGATTTGAAGCCGGAGAATTTTTTGTTCGCGAGTAAGAAAGAGAATTCGCCTTTGAAAGCTATTGATTTT GGCTTGTCTATTTTCTTTAAGCCAGGTGAGAGGTTCTCTGAAATTGTTGGAAGTCCTTATTACATGGCTCCAGAGGTGCTCAAGCGGAACTATGGACCGG AAATTGATATATGGAGTGCAGGGGTCATTCTCTATATCTTGTTGTGCGGTGTTCCGCCATTTTGGGCTGAGTCCGAGCAAGGAGTTGCTCAGGCCATTCT TCGTGGGATTATAGATTTCAAACGGGATCCATGGCCAAATATTTCGGAAAATGCTAAGAGTTTAGTGAGGCAAATGCTGGAGCCAGACCCAAAGCTTCGA TTAACTGCAAAACAAGTGTTAGAGCATCCTTGGCTCCTAAATGCTAAGAAAGCTCCAAATGTTCCTCTTGGAGATGTTGTCAAGTCAAGACTTAAGCAGT TTTCAATGATGAACAGATTCAAAAGAAAAGCTCTCAGGGTTATTGCTGATTTCTTATCCATTGAAGAAGTTGAAGATATCAAAGAAATGTTCAAGAAGAT GGACACCGATAATGACGGTATTGTTTCAATTGAAGAATTGAAAACTGGACTTCGAAGTTTTGGTTCCCAGCTTGGGGAGTCTGAAGTTCAAATGCTTATT GAAGCTGTAGATGCTAATGGGAAGGGTAAACTAGACTATGGGGAGTTTGTCGCTGTTTCTCTTCCTCTCCAAAGGATGGACAATGATGAGCATCTTCGCA AGGCATTCTCCTACTTCGACAAGGATGGCAATGGTTACATTTTGCCAGATGAGCTCCGGGATGCCCTGATGGAGGATGGAGCGGATGATTGTACAGATGT GGCAAATGACATCTTCCAAGAAGTAGACACTGACAAGGATGGAAGAATCAGCTATGACGAATTCTTTGCTATGATGAAAACTGGAACAGATTGGAGGAAA GTTTCCCGTCATTACTCTAGAGGGAGATTCAACAGTCTAAGCATGAAGCTCATGAAGGATGGTTCACTAAACCTGGGGAGTGAGTAA
AA sequence Show only first row Show all	>Potri.006G101300.3 pacid=42769960 polypeptide=Potri.006G101300.3.p locus=Potri.006G101300 ID=Potri.006G101300.3.v4.1 annot-version=v4.1 MGNCCRSPAAVAREDVKSSFSGHDHGKKDNTAKKTPQPITVLTGFPKENIEERYLVDRELGRGEFGVTYLCIERDSRELLACKSISKRKLRTAVDIEDVR REVAIMKHLPKSSSIVSLKEACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFASKKENSPLKAIDF GLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGIIDFKRDPWPNISENAKSLVRQMLEPDPKLR LTAKQVLEHPWLLNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSIEEVEDIKEMFKKMDTDNDGIVSIEELKTGLRSFGSQLGESEVQMLI EAVDANGKGKLDYGEFVAVSLPLQRMDNDEHLRKAFSYFDKDGNGYILPDELRDALMEDGADDCTDVANDIFQEVDTDKDGRISYDEFFAMMKTGTDWRK VSRHYSRGRFNSLSMKLMKDGSLNLGSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51850		CPK13	calcium-dependent protein kina...		Potri.006G101300 [exp]	0	1
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.004G093500 [exp]	2.82	0.9435
AT4G32140			EamA-like transporter family (...		Potri.018G024700 [exp]	3.74	0.9068
					Potri.008G115533 [exp]	5.09	0.9182
AT1G27850			unknown protein		Potri.010G056200 [exp]	7.34	0.9175
AT5G13500			unknown protein		Potri.001G028100 [exp]	7.34	0.9069
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.005G226700 [exp]	8.36	0.9115
AT1G28240			Protein of unknown function (D...		Potri.004G044100 [exp]	11.31	0.9138
AT3G10180			P-loop containing nucleoside t...		Potri.006G040700 [exp]	12.24	0.8974
AT3G57220			Glycosyl transferase family 4 ...		Potri.006G045700 [exp]	16.24	0.9022
AT3G01300			Protein kinase superfamily pro...		Potri.018G127300 [exp]	16.73	0.8612

Compare expression of checked genes

Potri.006G101300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.