Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACX4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51840 750 / 0 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1) AT3G45300 144 / 8e-39 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1) AT5G65110 78 / 3e-15 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT1G06290 66 / 2e-11 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT4G16760 56 / 5e-08 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT2G35690 54 / 1e-07 ACX5 acyl-CoA oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G118000 [exp] 839 / 0 AT3G51840 750 / 0.0 acyl-CoA oxidase 4 (.1) Potri.009G011700 [exp] 144 / 2e-38 AT3G45300 694 / 0.0 isovaleryl-CoA-dehydrogenase (.1) Potri.007G090400 [exp] 77 / 6e-15 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.005G077600 [exp] 67 / 8e-12 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.003G079200 [exp] 64 / 1e-10 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.001G155500 [exp] 62 / 5e-10 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.010G010448 [exp] 42 / 0.0006 AT3G06810 1251 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027811 [exp] 746 / 0 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1) Lus10036122 [exp] 145 / 7e-39 AT3G45300 686 / 0.0 isovaleryl-CoA-dehydrogenase (.1) Lus10041711 [exp] 75 / 4e-14 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10004745 [exp] 66 / 3e-11 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10007815 [exp] 65 / 7e-11 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004386 [exp] 62 / 6e-10 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10040183 [exp] 60 / 2e-09 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10024038 [exp] 57 / 2e-08 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02770 [poplar] [flax] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0544 [poplar] [flax] AcylCoA_ox_dh_N PF02771 [poplar] [flax] Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G101800.3 pacid=42768606 polypeptide=Potri.006G101800.3.p locus=Potri.006G101800 ID=Potri.006G101800.3.v4.1 annot-version=v4.1 ATGTCAATCCCTAAAAACAAAGCAGATGAGGTTGAGCAAAATCCAAGGAGCTCGTATTTTAATTTACCGCCGTTGGATGTTTCCGTCGCCTTCCCTCAAG CAACTCCAGTTTCCACATTTCCTCCTAGCGTTTCAGATTACTATCAATTCAGTGATTTATTAACCGTGGAGGATCAGGCACTCAGGATGAGAGTGAGGGA GTGTATGGAGAAGGAAATAGCTCCGATGATGACAGAGTATTGGGAGAAGGCGAAGTTCCCGTTTCATGCTATTCCGAAGCTCGGTGCCTTGGGTATAGCT GGGGGAACGATCAAGGGTTATGGGTGCCCTGGTCTTTCCATCACTGCAAGTGCCATCGCGATGGCAGAAGTTGCTAGAGTTGACGCGAGCTGTTCGACTT TTATTTTGGTGCATTCTCTGGCAATGCTCACCATAGCATTTTGTGGTTCAGAGGAACAGAAGCTGAAATATTTACCTTCTTTGGCACAGTTCAGCACCGT AGCTTGTTGGGCTTTGACCGAGCCTGACTATGGAAGTGATGCAAGTGGTCTGAAAACAACAGCAATAAAGGTGGAAGGAGGTTGGATACTCGAGGGCAAA AAACGCTGGATAGGAAACAGTACCTTTGCAGATTTGCTTGTTGTATTCGCTCGCAATACCACTACTAATCAGATTAACGGATTTATAGTAAAGAAGGACG CTCCTGGATTAACAGTTACAAAAATTGAAAATAAAATTGGTCTGCGCATCGTACAAAATGGAGATATTGTCATGAAAAGAGTTTTTGTTCCTGATGAGGA CAGGTTGCCTGGTGTCAACTCTTTTCAAGATACAAATAAGGTTCTAGCTGTTTCGCGCATAATGGTTGCCTGGCAACCTATTGGCATATCAATGGGGGTC TATGACATGTGTCACAGGTATCTAAAGGAAAGGAAACAATTTGGAGCACCATTGGCAGCTTTCCAAATCAATCAACAGAAACTTGTTCACATGCTTGGTA ATGTCCAAGCAATGGTACTAGTTGGTTGGCGTCTTTGCAAGTTGTATGAAAAGGAAAAAATGACCCCAGGTCAAGCTAGCTTGGCAAAGGCATGGATCAG TTTGAAGGCAAGGGAAACTGCTAGTATTGGGAGGGAGTTACTTGGTGGCAATGGAATTTTGGCTGATTTTCTAGTTGCCAAGGCACTATGTGATTTAGAA CCCATTTACACATATGAAGGCACCTATGACATCAACAGCTTGATAACAGGCAGGGAAATCACTGGTCTTGCCAGTTTTAAGCCAGCGATGTTGAGCAAGC GAAGTCGCATGTAG
AA sequence Show only first row Show all	>Potri.006G101800.3 pacid=42768606 polypeptide=Potri.006G101800.3.p locus=Potri.006G101800 ID=Potri.006G101800.3.v4.1 annot-version=v4.1 MSIPKNKADEVEQNPRSSYFNLPPLDVSVAFPQATPVSTFPPSVSDYYQFSDLLTVEDQALRMRVRECMEKEIAPMMTEYWEKAKFPFHAIPKLGALGIA GGTIKGYGCPGLSITASAIAMAEVARVDASCSTFILVHSLAMLTIAFCGSEEQKLKYLPSLAQFSTVACWALTEPDYGSDASGLKTTAIKVEGGWILEGK KRWIGNSTFADLLVVFARNTTTNQINGFIVKKDAPGLTVTKIENKIGLRIVQNGDIVMKRVFVPDEDRLPGVNSFQDTNKVLAVSRIMVAWQPIGISMGV YDMCHRYLKERKQFGAPLAAFQINQQKLVHMLGNVQAMVLVGWRLCKLYEKEKMTPGQASLAKAWISLKARETASIGRELLGGNGILADFLVAKALCDLE PIYTYEGTYDINSLITGREITGLASFKPAMLSKRSRM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Potri.006G101800 [exp]	0	1	Pt-ACX4.1
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Potri.002G047875 [exp]	5.29	0.7825
					Potri.011G153800 [exp]	26.98	0.7218
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Potri.018G152100 [exp]	42.00	0.7033	Pt-BETA-TIP.1
AT3G20530			Protein kinase superfamily pro...		Potri.011G000500 [exp]	45.95	0.7567
AT2G01060	GARP		myb-like HTH transcriptional r...		Potri.016G117000 [exp]	47.74	0.7448
AT1G11800			endonuclease/exonuclease/phosp...		Potri.004G010900 [exp]	56.92	0.7497
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.005G191500 [exp]	73.17	0.7031	SEC5.1
AT4G21780			unknown protein		Potri.011G000400 [exp]	75.63	0.7293
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.003G111600 [exp]	78.57	0.7489
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Potri.002G176700 [exp]	86.71	0.7114	CRK3

Compare expression of checked genes

Potri.006G101800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.