Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38280 1382 / 0 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119300 [exp] 1709 / 0 AT2G38280 1355 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.010G034800 [exp] 1007 / 0 AT2G38280 974 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002849 [exp] 1481 / 0 AT2G38280 1330 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10027814 [exp] 1323 / 0 AT2G38280 1280 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10037223 [exp] 958 / 0 AT2G38280 989 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10036700 [exp] 927 / 0 AT2G38280 939 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10003378 [exp] 794 / 0 AT2G38280 661 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10005043 [exp] 254 / 1e-78 AT2G38280 249 / 1e-77 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [poplar] [flax] Amidohydrolase PF00962 [poplar] [flax] A_deaminase Adenosine/AMP deaminase
Representative CDS sequence Show only first row Show all	>Potri.006G102000.2 pacid=42769462 polypeptide=Potri.006G102000.2.p locus=Potri.006G102000 ID=Potri.006G102000.2.v4.1 annot-version=v4.1 ATGGATGCGTACGCGCTGCATCTAGCGATGGCGGCTCTAGTAGGAGCATCATTTGTGGCAGTATCCGCTTATTATATGCACCGCAAAACCCTAACTCAAC TCCTCGAGTTCGCGAAGACGGTAGAGAGAGAACGAGAACGAGACGACAACTCCGACGGCGGAGGATCGTCGCCGCAGAATTTGAAAAAGAGTAGGAGTCA CGGACGGAGGAAAGGGAGTAATGGTCACTACAACAAGCGTGGCTCAGCTTCGTTACCGGATGTGACGGCAATTTCTGGTGGTGGAATTGATGGAGAGGAG AAACGTAACGGTCAGGTGCTTTATGTCGAAGGGATTCCTGCTGGATTGCCTAGGCTTCATACTTTGCTTGAAGGGAAATCTGCTGGACATGTCAAGAGAC CTGCAAGTTTTATCAGACCAACTTCTCCAAAGTCTCCTGGTGCCAGTGCGAGTGCCTTTGACAGCGTGGAAGGATCAGATGATGAAGATAATATGACTGG CAATTCTAAACTAGACACTACATATCTGCATATCAATGGAAATGCTGATATAAAGGATGTTTTACCACAACACATTAATGCAAATGGAGACCAAATGCCT ATACCTGCTTCAAGCATGATTCGATCCCATAGCGTGTCTGGTGACCTGCATGGTGTTCAGCCAGATCCTTTTGCAGCTGATATTCTAAGGAAAGAGCCAG AACAAGAAACTTTTGCTCGACTTAAAATTTCTCCTATGGCAGAGGTGCCATCACCAGATGAAGTGGATTCCTATATAGTTCTTCAAGAATGCCTTGAAAT GCGAAAAAGATATGTATTCAAGGAAGCTATTGCTCCATGGGAGAAAGAAATTATTTCTGACCCTAGTACACCAAAGCCTAATCCTGACCCGTTCTCCTAT ACCCCAGAGGGAAAATCTGATCATTATTTTGAGATGCAAGATGGGGTCATCCATGTCTATCCAAATAAAGATTCTAAGGAAGAACTTTTTCCTGTTGCTG ATGCAACAATGTTTTTCACTGATTTGCATCACATACTTCGAGTTATTGCGATTGGAAATATCAGGACTCTATGTCATCATCGGCTGAATCTCCTAGAACA AAAATTCAACCTTCATCTGATGCTTAATGCGGATAGAGAGTTTCTCGCTCAGAAAAGTGCTCCACATCGTGACTTCTATAATGTCAGGAAAGTTGATACA CATGTTCATCATTCTGCGTGCATGAACCAGAAACATCTTTTAAGGTTTATAAAGTCAAAATTGAGGAAAGAGCCTGACGAGGTTGTAATTTTTCGAGATG GAACATACTTGACATTGAAAGAAGTGTTTGAGAGTTTGGATTTGACTGGGTATGATCTCAATGTTGACCTTTTAGATGTTCATGCGGACAAGAGCACGTT TCATCGCTTTGATAAGTTCAACCTGAAGTACAATCCTTGTGGTCAGAGTAGGCTCAGGGAGATTTTCCTTAAACAAGATAACCTTATCCAAGGCCGTTTC CTTGGTGAACTGACAAAACAAGTCTTTTCTGATCTCGTTGCTAGTAAATATCAGATGGCTGAATATAGAATATCAATATATGGTAGAAAGCAAAGTGAAT GGGACCAATTGGCTAGTTGGATAGTGAATAATGAATTGTACAGCGAAAATGTTGTTTGGTTAATCCAGCTTCCAAGACTGTATAATATCTACAAGGAAAT GGGGATTGTGACATCATTTCAGAATATTCTTGATAATATCTTCATGCCGCTTTTTGAGGTTACAGTTGATCCAGATTCGCATCCTCAGCTGCATGTTTTC TTAAAACAGGTTGTTGGGTTGGACTTGGTTGATGATGAAAGCAAACCTGAAAGACGCCCGACGAAGCACATGCCTACACCAGTTCAATGGACCAATGTGT TCAATCCTGCGTTTTCATATTATGTTTATTACTGTTATGCCAACCTCTACACATTAAACAAGCTTCGTGAGTCAAAGGGCATGACAACTATCAAATTCCG TCCCCATTCTGGAGAGGCTGGTGATATTGATCATCTTGCTGCCACATTTCTTACATGTCATAATATTGCCCATGGGATCAATTTGAGGAAATCTCCAGTA CTTCAATATTTGTATTATCTGGCACAGATTGGCTTGGCTATGTCTCCTCTGAGCAACAATTCCTTATTTTTAGACTACCATAGGAACCCTTTCCCTATGT TTTTCTTAAGGGGTCTCAATGTTTCCCTTTCAACCGATGATCCGCTCCAAATCCATTTAACAAAAGAGCCCTTGGTGGAAGAATATAGCATAGCTGCTTC TGTGTGGAAGTTGAGTTCATGCGATCTGTGTGAGATTGCCCGAAATTCAGTCTACCAATCAGGTTTCTCGCATGCTTTGAAGTCGCACTGGATTGGTAAA GAGTACTACAATAGAGGACCAGATGGAAATGATATTCACAAGACAAATGTGCCTCATATCCGGGTGGAATTTCGAGACACGATATGGAGAGATGAGATGC AGCAGGTTTATCTTGGCAAGGCCATTATCCCCAAAGAAGTGGACAAGTAA
AA sequence Show only first row Show all	>Potri.006G102000.2 pacid=42769462 polypeptide=Potri.006G102000.2.p locus=Potri.006G102000 ID=Potri.006G102000.2.v4.1 annot-version=v4.1 MDAYALHLAMAALVGASFVAVSAYYMHRKTLTQLLEFAKTVERERERDDNSDGGGSSPQNLKKSRSHGRRKGSNGHYNKRGSASLPDVTAISGGGIDGEE KRNGQVLYVEGIPAGLPRLHTLLEGKSAGHVKRPASFIRPTSPKSPGASASAFDSVEGSDDEDNMTGNSKLDTTYLHINGNADIKDVLPQHINANGDQMP IPASSMIRSHSVSGDLHGVQPDPFAADILRKEPEQETFARLKISPMAEVPSPDEVDSYIVLQECLEMRKRYVFKEAIAPWEKEIISDPSTPKPNPDPFSY TPEGKSDHYFEMQDGVIHVYPNKDSKEELFPVADATMFFTDLHHILRVIAIGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKVDT HVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRF LGELTKQVFSDLVASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQLPRLYNIYKEMGIVTSFQNILDNIFMPLFEVTVDPDSHPQLHVF LKQVVGLDLVDDESKPERRPTKHMPTPVQWTNVFNPAFSYYVYYCYANLYTLNKLRESKGMTTIKFRPHSGEAGDIDHLAATFLTCHNIAHGINLRKSPV LQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPMFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHWIGK EYYNRGPDGNDIHKTNVPHIRVEFRDTIWRDEMQQVYLGKAIIPKEVDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Potri.006G102000 [exp]	0	1
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Potri.006G211700 [exp]	1.00	0.8467
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.001G394600 [exp]	1.73	0.8072
AT3G62310			RNA helicase family protein (....		Potri.002G192500 [exp]	6.00	0.8038
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	9.69	0.8453
AT5G53770			Nucleotidyltransferase family ...		Potri.001G400800 [exp]	17.83	0.7885
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	22.02	0.7954
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.001G243400 [exp]	23.04	0.7873
AT4G01400			unknown protein		Potri.014G105900 [exp]	24.71	0.7816
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Potri.015G041500 [exp]	29.69	0.7815
AT2G03140			alpha/beta-Hydrolases superfam...		Potri.006G136900 [exp]	34.29	0.7847

Compare expression of checked genes

Potri.006G102000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.