Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51820 547 / 0 PDE325, ATG4, G4, CHLG PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) AT3G11945 53 / 2e-07 PDS2, ATHST PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119400 [exp] 572 / 0 AT3G51820 541 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.018G022000 [exp] 57 / 1e-08 AT2G18950 369 / 2e-125 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.006G197600 [exp] 50 / 9e-07 AT3G11945 560 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Potri.018G090700 [exp] 46 / 3e-05 AT2G18950 529 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027815 [exp] 575 / 0 AT3G51820 604 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10002850 [exp] 521 / 0 AT3G51820 518 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10003379 [exp] 518 / 1e-179 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10000126 [exp] 256 / 8e-85 AT3G51820 253 / 1e-83 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10016221 [exp] 50 / 1e-06 AT3G11945 538 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10029321 [exp] 49 / 3e-06 AT3G11945 399 / 5e-138 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF01040 [poplar] [flax] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Potri.006G102100.1 pacid=42768902 polypeptide=Potri.006G102100.1.p locus=Potri.006G102100 ID=Potri.006G102100.1.v4.1 annot-version=v4.1 ATGGCCTCCGTGCTTAACTCTGCTTTGTCCTTGAATTTATCCAATTTTAAAAGTAAACGAGTTCGAACTCACTCACTCGTCTCTCCGCTTTCTCTTCCTC TAACAAGGCGGAGAGTTACGATAAGAGCAGCAGATACGGATACAAATGAAGTGAAACCTCAGGCGCCGGTTAGTGGTGGTGCTGGTGGTTCCAGCTTTAA CCAGCTTCTTGGAATTAAAGGAGCTGCTCAAGAAACTAATAAATGGAAGATTCGTCTTCAACTTACAAAACCTGTTACTTGGCCTCCATTGGTTTGGGGA GTAGTTTGTGGAGCTGCTGCATCAGGAAACTTTAACTGGACTTTGGAGGATGTTGCTAAATCAATTGTTTGCATGCTTATGTCTGGCCCATTTCTTACTG GCTACACACAGACGATTAATGATTACTATGACCGAGAGATCGATGCAATTAATGAGCCTTATCGTCCAATTCCATCAGGGGCTATTTCTGAGAATGAGGT TATTACCCAACTCTGGGTGCTGCTTCTGGGAGGCCTTGGCTTGGCTGGTTTATTGGATGTGTGGGCAGGGCATGACTTTCCGGTAGTTTTTTACCTTGCT TTGGGTGGATCCTTGCTGTCATACATATACTCCGCTCCTCCTTTGAAGCTAAAACAAAATGGATGGATTGGGAATTTCGCCCTTGGAGCAAGTTATATCA GTTTGCCATGGTGGGCTGGTCAAGCTTTGTTTGGGACCCTTACACCTGACATAATTGTCCTGACACTCTTGTACAGCATAGCTGGGCTTGGTATTGCTAT TGTAAACGACTTTAAAAGCATTGAAGGAGATCGGGCACTTGGGCTTCAGTCACTACCGGTAGCTTTTGGTGCTGAAACTGCAAAATGGATTTGTGTTGGT GCTATTGACATAACTCAGTTATCTATAGCTGGTTATTTGCTAGCAGATGGTAAACCCTACTATGCTTTAGCCCTAGTCGGTTTGATAATCCCACAAATTG TTTTCCAGTTTCAATACTTCCTGAAGGACCCTGTGAAGTACGATGTTAAATATCAGGCCAGCGCTCAACCTTTTCTTGTGCTTGGTCTGTTGGTGACTGC TTTGGCAACTAGTCACTAA
AA sequence Show only first row Show all	>Potri.006G102100.1 pacid=42768902 polypeptide=Potri.006G102100.1.p locus=Potri.006G102100 ID=Potri.006G102100.1.v4.1 annot-version=v4.1 MASVLNSALSLNLSNFKSKRVRTHSLVSPLSLPLTRRRVTIRAADTDTNEVKPQAPVSGGAGGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWG VVCGAAASGNFNWTLEDVAKSIVCMLMSGPFLTGYTQTINDYYDREIDAINEPYRPIPSGAISENEVITQLWVLLLGGLGLAGLLDVWAGHDFPVVFYLA LGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGAETAKWICVG AIDITQLSIAGYLLADGKPYYALALVGLIIPQIVFQFQYFLKDPVKYDVKYQASAQPFLVLGLLVTALATSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Potri.006G102100 [exp]	0	1
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	1.00	0.9872
AT2G27680			NAD(P)-linked oxidoreductase s...		Potri.009G146000 [exp]	1.41	0.9867
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Potri.018G076600 [exp]	2.82	0.9836	Pt-HCF101.1
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Potri.008G117200 [exp]	3.00	0.9844
AT3G11210			SGNH hydrolase-type esterase s...		Potri.006G100300 [exp]	3.16	0.9816	CPRD49.3
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Potri.013G070500 [exp]	4.24	0.9811	Pt-SIGB.2
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	7.48	0.9795
AT3G05350			Metallopeptidase M24 family pr...		Potri.013G021400 [exp]	7.74	0.9750
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Potri.015G062100 [exp]	7.93	0.9801
AT2G18710		SCY1	SECY homolog 1 (.1)		Potri.006G175300 [exp]	8.12	0.9674

Compare expression of checked genes

Potri.006G102100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.