Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51800 574 / 0 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) AT3G59990 107 / 1e-25 MAP2B methionine aminopeptidase 2B (.1.2.3.4) AT2G44180 107 / 3e-25 MAP2A methionine aminopeptidase 2A (.1) AT4G37040 47 / 1e-05 MAP1D methionine aminopeptidase 1D (.1) AT1G13270 41 / 0.001 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119700 [exp] 652 / 0 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.004G084800 [exp] 105 / 8e-25 AT3G59990 712 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.017G133200 [exp] 100 / 6e-23 AT3G59990 716 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.005G137400 [exp] 49 / 3e-06 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003379 [exp] 615 / 0 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10005046 [exp] 610 / 0 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10027818 [exp] 609 / 0 AT3G51800 602 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002851 [exp] 608 / 0 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10023798 [exp] 291 / 2e-89 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1) Lus10000403 [exp] 93 / 2e-20 AT2G44180 682 / 0.0 methionine aminopeptidase 2A (.1) Lus10005292 [exp] 67 / 4e-12 AT3G59990 419 / 6e-147 methionine aminopeptidase 2B (.1.2.3.4) Lus10010592 [exp] 60 / 1e-09 AT3G59990 292 / 6e-96 methionine aminopeptidase 2B (.1.2.3.4) Lus10027121 [exp] 54 / 1e-07 AT2G44180 475 / 7e-168 methionine aminopeptidase 2A (.1) Lus10019308 [exp] 51 / 2e-06 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [poplar] [flax] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Potri.006G102200.1 pacid=42769230 polypeptide=Potri.006G102200.1.p locus=Potri.006G102200 ID=Potri.006G102200.1.v4.1 annot-version=v4.1 ATGTCGTCAGACGACGAGAGAGAGGAGAGAGAGTTGGATCTCACATCTCCTGAAGTCATCACCAAATACAAAAGCGCCGCAGAAATTGTCAACAAGGCAT TGCAGTTAGTGATATCAGAATGCAAGCCAAAGGCTAAGATTGTTGATATTTGTGAAAAAGGCGATTCTTTTATAAGAGAGCAAACTGGTAACATGTATAA AAATGTGAAGAAGAAGATTGAAAGGGGAGTTGCTTTTCCAACTTGTGTTTCTGTCAACAACACTATTTGCCATTTTTCTCCACTTGCTAGTGATGAATCG GTCTTGGAAGAAGGAGATATTGTCAAGATCGATTTGGGCTGTCATATAGATGGATTTATTGCTGTTGTTGGACATACCCATGCTCTTCAGTCAGGGCCAG TTACAGGCAGGGCAGCTGATGTTATTGCAGCTGCAAATACTGCTGCTGAAGTTGCCTTGAGGCTTGTAAGGCCTGGAAAAAAGAATAAAGATGTAACAGA AGCTATCCAGAAGGTTGCTGCTGCTTATGACTGCAAAATTGTTGAAGGTGTTCTCAGCCACCAATTGAAGCAGTTTGTGATAGATGGAAACAAGGTAATT CTGAGTGTCTCCAATCCTGACACAAGAGTTGATGATGCAGAATTTGAGGAAAACGAAGTGTATGCCGTGGATATTGTCACAAGTACAGGGGAAGGCAAGC CAAAACTGTTGGATGAGAAGAGTACTACTATATACAAGAGAGCTGTAGACAAGAATTATCACTTGAAAATGAAATCTTCGAGATTTATTTTCAGTGAAAT TAATCAGAAATTTCCAATCATGCCATTCACTGCAAGAGCTCTCGAAGAGAAAAGGGCTCGGCTGGGATTATTAGAATGTGTGAATCACGATCTTCTGCAG CCCTATCCTGTTCTTCATGAGAAGCCTGGTGATTATGTTGCTCATATCAAGTTTACGGTATTGCTAATGCCAAATGGATCAGATCGGATCACTTCACATT CACTGCAAGAATTGCAGCCTAGCAAGACGATAGATGATCCTGAAATCAAGGCCTGGTTGGCTTTGGGTACAAAGACAAAGAAGAAGGGTGGTGGGAAGAA GAAGAAAGCTAAGAAGTCTGGTGAAAAAGCTGAGTCAACAGAAGCTGAACCCATGGATGCAACAACAAATGGGGCTGCTGCGCAAGAATGA
AA sequence Show only first row Show all	>Potri.006G102200.1 pacid=42769230 polypeptide=Potri.006G102200.1.p locus=Potri.006G102200 ID=Potri.006G102200.1.v4.1 annot-version=v4.1 MSSDDEREERELDLTSPEVITKYKSAAEIVNKALQLVISECKPKAKIVDICEKGDSFIREQTGNMYKNVKKKIERGVAFPTCVSVNNTICHFSPLASDES VLEEGDIVKIDLGCHIDGFIAVVGHTHALQSGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAYDCKIVEGVLSHQLKQFVIDGNKVI LSVSNPDTRVDDAEFEENEVYAVDIVTSTGEGKPKLLDEKSTTIYKRAVDKNYHLKMKSSRFIFSEINQKFPIMPFTARALEEKRARLGLLECVNHDLLQ PYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHSLQELQPSKTIDDPEIKAWLALGTKTKKKGGGKKKKAKKSGEKAESTEAEPMDATTNGAAAQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Potri.006G102200 [exp]	0	1
AT5G12320			ankyrin repeat family protein ...		Potri.009G070700 [exp]	4.47	0.8321
AT5G50810		TIM8	translocase inner membrane sub...		Potri.015G102000 [exp]	8.94	0.8621
AT5G37350			Serine/threonine-protein kinas...		Potri.015G096100 [exp]	9.21	0.7945
AT3G03060			P-loop containing nucleoside t...		Potri.001G458200 [exp]	9.38	0.8388
AT4G34670			Ribosomal protein S3Ae (.1)		Potri.005G051200 [exp]	9.79	0.8792
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.006G148600 [exp]	16.61	0.7895	NFA902
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132551 [exp]	19.62	0.8466
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Potri.015G147500 [exp]	19.74	0.8364
AT3G03920			H/ACA ribonucleoprotein comple...		Potri.013G058400 [exp]	21.54	0.8605
AT5G23535			KOW domain-containing protein ...		Potri.004G062600 [exp]	23.49	0.8620

Compare expression of checked genes

Potri.006G102200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.