Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58590 260 / 2e-88 RANBP1 RAN binding protein 1 (.1) AT2G30060 258 / 1e-87 Pleckstrin homology (PH) domain superfamily protein (.1) AT1G07140 249 / 8e-84 SIRANBP Pleckstrin homology (PH) domain superfamily protein (.1) AT3G15970 47 / 5e-06 NUP50 (Nucleoporin 50 kDa) protein (.1) AT1G52380 42 / 0.0003 NUP50 (Nucleoporin 50 kDa) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119800 [exp] 334 / 3e-117 AT5G58590 265 / 2e-90 RAN binding protein 1 (.1) Potri.009G073400 [exp] 282 / 4e-97 AT5G58590 267 / 3e-91 RAN binding protein 1 (.1) Potri.001G278900 [exp] 275 / 2e-94 AT5G58590 263 / 6e-90 RAN binding protein 1 (.1) Potri.003G056400 [exp] 52 / 1e-07 AT1G52380 225 / 7e-68 NUP50 (Nucleoporin 50 kDa) protein (.1) Potri.001G179100 [exp] 52 / 2e-07 AT1G52380 326 / 4e-107 NUP50 (Nucleoporin 50 kDa) protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037241 [exp] 280 / 4e-96 AT5G58590 264 / 4e-90 RAN binding protein 1 (.1) Lus10035656 [exp] 279 / 1e-95 AT5G58590 270 / 3e-92 RAN binding protein 1 (.1) Lus10035655 [exp] 279 / 2e-95 AT5G58590 267 / 4e-91 RAN binding protein 1 (.1) Lus10037242 [exp] 278 / 2e-95 AT5G58590 269 / 6e-92 RAN binding protein 1 (.1) Lus10037931 [exp] 55 / 2e-08 AT3G15970 343 / 7e-114 NUP50 (Nucleoporin 50 kDa) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00638 [poplar] [flax] Ran_BP1 RanBP1 domain
Representative CDS sequence Show only first row Show all	>Potri.006G102400.1 pacid=42767642 polypeptide=Potri.006G102400.1.p locus=Potri.006G102400 ID=Potri.006G102400.1.v4.1 annot-version=v4.1 ATGGCAACTACTAGTATTTCTTCAGTTGCAAGCGAGCCAGAGCACAACACCAAATCAAGAGAATTAGAAGAAGAGAACGCAACTAAAACAGGAGCTGCCG ACGATGAGGATACCGGAGCTCAGGTTGCACCAATCGTTAAGCTGGAAGAAGTCCCTGTTACTACCGGAGAGGAAGATGAAGATGCCATCCTTGATCTGAA GGCGAAGTTGTATAGATTTGATAAAGAAGGGAGTCAGTGGAAAGAGAGAGGAGTTGGAACTGTGAAGCTTTTAAAACATAAAGAATCTGCCAAAGTTCGT CTTGTTTTTCGCCAATCTAAGACTCTCAAGATCTGCGCTAACCATCTAGTTCTGCCTACAATTAATGTGCAAGAGCATCATGGGAATGACAAATCATGTT TGTGGCATGCTGCTGATTTTGCTGATGGGGAATTGAAGGATGAGCTTTTCTGTATCAGATTTCCTTCGGTTGAAAATTGCAAAACTTTCAAGGAGACTGT TGAAGAGGTGGCAGAAAGTCAGGGAAAGAAAGAAGAGAGTAAAGATGCTGCAGATGCTGCAGGACTCCTTGAGAAGTTGAGTGTTGGGGATAGTAAAACC GAAGAAAAAGAAAAGCAAGCCAAAGAGCTTAGCCAAACTGTAGCTGATAAAGCAAAGGAAGATGGAGAAAAGGAGGACGAGCCTGCTTCATCTACATAG
AA sequence Show only first row Show all	>Potri.006G102400.1 pacid=42767642 polypeptide=Potri.006G102400.1.p locus=Potri.006G102400 ID=Potri.006G102400.1.v4.1 annot-version=v4.1 MATTSISSVASEPEHNTKSRELEEENATKTGAADDEDTGAQVAPIVKLEEVPVTTGEEDEDAILDLKAKLYRFDKEGSQWKERGVGTVKLLKHKESAKVR LVFRQSKTLKICANHLVLPTINVQEHHGNDKSCLWHAADFADGELKDELFCIRFPSVENCKTFKETVEEVAESQGKKEESKDAADAAGLLEKLSVGDSKT EEKEKQAKELSQTVADKAKEDGEKEDEPASST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.006G102400 [exp]	0	1
AT4G24290			MAC/Perforin domain-containing...		Potri.003G006500 [exp]	4.00	0.8269
AT5G46630			Clathrin adaptor complexes med...		Potri.001G143800 [exp]	7.74	0.7407
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.004G122100 [exp]	9.89	0.7897
AT1G76440			HSP20-like chaperones superfam...		Potri.001G243100 [exp]	10.39	0.7516
AT5G39590			TLD-domain containing nucleola...		Potri.002G024966 [exp]	13.56	0.7826
AT5G12470			Protein of unknown function (D...		Potri.001G256300 [exp]	13.78	0.7727
AT1G03990			Long-chain fatty alcohol dehyd...		Potri.002G259700 [exp]	16.49	0.7360
AT3G61680			alpha/beta-Hydrolases superfam...		Potri.002G169600 [exp]	20.04	0.8130
AT3G12040			DNA-3-methyladenine glycosylas...		Potri.016G060000 [exp]	23.55	0.7957
					Potri.001G054850 [exp]	26.38	0.7411

Compare expression of checked genes

Potri.006G102400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.