Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PDC1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01320 1023 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT4G33070 1018 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G54960 1014 / 0 PDC2 pyruvate decarboxylase-2 (.1) AT5G01330 976 / 0 PDC3 pyruvate decarboxylase-3 (.1) AT3G48560 63 / 3e-10 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120100 [exp] 1100 / 0 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.011G064000 [exp] 959 / 0 AT5G01320 962 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.004G054100 [exp] 956 / 0 AT4G33070 949 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.017G151900 [exp] 937 / 0 AT5G01320 959 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.012G098300 [exp] 71 / 1e-12 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.015G097200 [exp] 51 / 2e-06 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003384 [exp] 1039 / 0 AT5G54960 1068 / 0.0 pyruvate decarboxylase-2 (.1) Lus10002217 [exp] 1032 / 0 AT5G54960 1061 / 0.0 pyruvate decarboxylase-2 (.1) Lus10027820 [exp] 1018 / 0 AT5G54960 1058 / 0.0 pyruvate decarboxylase-2 (.1) Lus10005048 [exp] 1018 / 0 AT5G54960 1067 / 0.0 pyruvate decarboxylase-2 (.1) Lus10015291 [exp] 954 / 0 AT4G33070 978 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10018181 [exp] 673 / 0 AT4G33070 683 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10025654 [exp] 665 / 0 AT5G54960 686 / 0.0 pyruvate decarboxylase-2 (.1) Lus10016751 [exp] 50 / 5e-06 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 47 / 2e-05 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022445 [exp] 45 / 6e-05 AT3G48560 325 / 7e-108 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0085 [poplar] [flax] FAD_DHS PF00205 [poplar] [flax] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain CL0254 [poplar] [flax] THDP-binding PF02775 [poplar] [flax] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [poplar] [flax] THDP-binding PF02776 [poplar] [flax] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G102500.1 pacid=42768983 polypeptide=Potri.006G102500.1.p locus=Potri.006G102500 ID=Potri.006G102500.1.v4.1 annot-version=v4.1 ATGGACACCAAGATAGGATCTCCTGACACTTGCAAACCAACAAGCAACGACATGATCAACCCAACTAACGCCACCGTATCAACCGTCCAAAACTCAGTCT CATCCACCATTATCAACCCATCCCAGTCAACACTGGGTCGCCACCTCGCTCGCCGACTCGTCCAAATCGGTGTCACTGACGTTTTCTCTGTCGCTGGTGA CTTCAATCTCATTCTCCTTGATCACTTGATCGCCGAGCCTGGGCTCAACCTTATCGGTTGCTGTAACGAGCTCAACGCGGGCTATGCTGCTGATGGATAC GCCCGGTCACGTGGTGTAGGCGCGTGTGTTGTCACGTTCACTGTTGGTGGACTCAGTGTGCTAAATGCTATTGCTGGTGCTAATAGTGAGAATTTGCCTG TCATATGCATTGTTGGTGGGCCCAACTCGAATGATTATGGGACTAACAGGATTTTACACCATACCATTGGCTTGCCTGATTTTAGCCAGGAACTAAGATG TTTCCAGACCGTTACTTGCTATCAGGCTGTGGTGAATAACTTGGAGGACGCACATGAACAGATAGATACTGCTATTTCAACTGCTTTGAAAGAAAACAAG CCTGTTTACATCAATGTTAGCTGTAACTTGTCAGCAATCCCTCATCCTGCTTTTTGTCGGGAGCCAGTTCCATTTTCGCTCTCCCCCAAAATTAGTAATG AATTGGGCTTAGAGGCTGCAGTGGAAGCGGCTGCCGAATTCTTGAACAAGGCAGTGAAACCTGTTTTGGTGGGTGGCCCTAAACTAAGACCTGCACATGC AAGTGAGGCATTTGTGGAGTTAGCTGATGCATGTGGTTATGCGCTCGCTGTTATGCCATCGGCTAAGGGGCTTGTGCCAGAGCATCATCCACATTTCGTT GGGACTTATTGGGGTGCAGTGAGCTCTGCATTCTGTGCTGAGATTGTGGAGTCCGCGGATGCTTACTTGTTTGCTGGACCTATTTTCAATGATTATAGCT CCGTTGGGTATTCTCTTCTTCTCAAGAAGGAGAAGGCGATTATCGTGCAGCCTGATCGTGTGATGATTGCAAATGGACCTGCATTTGGCTGTGTTCTGAT GAAAGATTTCTTCGTGGCTCTTGCGAAGAAGATCAAGCCCAACACTACTGCTTATGATAATTACCAAAGAATATTTGTTCCTGAGGGGGAACCATTGAGA AATGCACCCGAAGAACCTTTGAGGGTTAATGTTCTGTTCCAACATGTACAGAAGATGCTGTCTAGTGAAACTGCTGTGATTGCTGAGACTGGAGACTCAT GGTTTAACTGTCAGAAGCTGAAATTGCCAAGGGGATGCGGGTATGAGTTCCAAATGCAGTATGGATCAATTGGTTGGTCAGTTGGTGCTACTCTTGGGTA TGCTCAGGCTGTGCCAGAGAAGCGTGTGATTGCTTGCATAGGTGATGGTAGCTTTCAGGTAACTGCTCAAGATGTGTCTACTATGCTACGATGTAGACAG AACACCATCATCTTCCTCATCAACAATGGTGGATACACAATTGAAGTCGAGATCCACGACGGTCCTTATAATGTGATTAAGAACTGGAACTACACTAGCT TGGTTGATGCCATCCACAATGGCGAAGGCAAGTGCTGGACAGCCAAGGTGTTCTGCGAGGATGAGCTGGTTGAAGCGATTGAGACAGCAACAGGACCGGA GAAGGATAGCTTGTGCTTCATTGAGGTTATTGTTCACAAGGATGATACCAGTAAAGAACTGTTGGAATGGGGGTCTAGGGTCTCTGCTGCCAATAGCCGT CAACCAAACCCTCAGTAG
AA sequence Show only first row Show all	>Potri.006G102500.1 pacid=42768983 polypeptide=Potri.006G102500.1.p locus=Potri.006G102500 ID=Potri.006G102500.1.v4.1 annot-version=v4.1 MDTKIGSPDTCKPTSNDMINPTNATVSTVQNSVSSTIINPSQSTLGRHLARRLVQIGVTDVFSVAGDFNLILLDHLIAEPGLNLIGCCNELNAGYAADGY ARSRGVGACVVTFTVGGLSVLNAIAGANSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHEQIDTAISTALKENK PVYINVSCNLSAIPHPAFCREPVPFSLSPKISNELGLEAAVEAAAEFLNKAVKPVLVGGPKLRPAHASEAFVELADACGYALAVMPSAKGLVPEHHPHFV GTYWGAVSSAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVMIANGPAFGCVLMKDFFVALAKKIKPNTTAYDNYQRIFVPEGEPLR NAPEEPLRVNVLFQHVQKMLSSETAVIAETGDSWFNCQKLKLPRGCGYEFQMQYGSIGWSVGATLGYAQAVPEKRVIACIGDGSFQVTAQDVSTMLRCRQ NTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTSLVDAIHNGEGKCWTAKVFCEDELVEAIETATGPEKDSLCFIEVIVHKDDTSKELLEWGSRVSAANSR QPNPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01320			Thiamine pyrophosphate depende...		Potri.006G102500 [exp]	0	1	Pt-PDC1.4
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G427670 [exp]	15.39	0.7932
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.006G023600 [exp]	15.55	0.7932
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.007G060300 [exp]	15.87	0.6932	Pt-ATPLDDELTAA.1
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.010G069000 [exp]	24.59	0.7261
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Potri.014G056800 [exp]	29.24	0.7133
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.007G120900 [exp]	37.94	0.6995
AT1G67550		URE	urease (.1)		Potri.008G177900 [exp]	50.29	0.7101
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G276200 [exp]	51.84	0.7181
AT5G10530			Concanavalin A-like lectin pro...		Potri.003G094700 [exp]	66.54	0.6679
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G006800 [exp]	90.89	0.6342

Compare expression of checked genes

Potri.006G102500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.