Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08870 645 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01550 632 / 0 LECRKA4.2 lectin receptor kinase a4.1 (.1) AT5G01560 622 / 0 LECRKA4.3 lectin receptor kinase a4.3 (.1) AT5G01540 612 / 0 LECRKA4.1 lectin receptor kinase a4.1 (.1) AT4G02420 558 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 557 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 546 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 543 / 0 RLK receptor lectin kinase (.1) AT3G55550 537 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 513 / 3e-174 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G123300 [exp] 983 / 0 AT5G01550 629 / 0.0 lectin receptor kinase a4.1 (.1) Potri.016G122650 [exp] 969 / 0 AT5G01550 576 / 0.0 lectin receptor kinase a4.1 (.1) Potri.006G088900 [exp] 595 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 587 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 585 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 583 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 569 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.009G035400 [exp] 565 / 0 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 561 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022662 [exp] 751 / 0 AT5G01550 651 / 0.0 lectin receptor kinase a4.1 (.1) Lus10012509 [exp] 652 / 0 AT3G08870 555 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 577 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 574 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10029315 [exp] 572 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 566 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 563 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 559 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 552 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 549 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.006G103200.1 pacid=42770530 polypeptide=Potri.006G103200.1.p locus=Potri.006G103200 ID=Potri.006G103200.1.v4.1 annot-version=v4.1 ATGGCCTCGACGATCTATTTAGTTTTGTTGTTCTTATTCTTTTGTATGGTCGCTGAGGCTCAAGATGTAGAATTCCTCTTCAATGGATTCAATGGAAGTG AAGCAAACCTCACACTTGATAAAGTTTCCATTATCAAGCCTAGTGGTTTACTAAGGCTCACCAACAAAACGCAAAATGCTGTAGGACATGCATTTTATTC CGAAAAAGTACAAATGCTTAACAGAAGTTCATCTTCGTCTCCGAATGCTTCTTCTTTCAGCACAGCTTTTGTCTTTCAGATAATCTCTCCATCCAAAGGT GAGGGAGGATTCGGCTTTGCTTTCACCTTATCTCCCTCCGATCGGCTTCCTGGGGCTGAGGCGAGGCATTACCTTGGTCTTTTCAACTCTACGAACGATG GTTCGTCCTCCAACTATATTTTTGCTGTCGAATTCGACACAGTTAATGGATTCAACGAGAGTACAGACTCTGTAGGCAATCATGTCGGAATCAACATCAA CAGCGTGGATTCAAAAGCAGGAAAACCAGCTTCTTATAACGACGACGTAGACCGGCTTGATTCATTTGAAGAATTGGTGTTGGAGAGTGGTCAACCTATT CAAGCTTGGGTCGAATATAATGGTGTGACTAAATGTATTAACGTAACAATAGCTCCCATGGACCATGGCAAACCGATTGAACCACTCATTTCCTTCCCAC AAGATCTAAGCACTTATGTTAGGGAGGATATGTATGTTGGTTTCTCCGCCTCTACTGGAAATAAGGCGAGTTCTCATTACATACTGGGATGGAGTTTTTC CACCAAGGGAGAAGCCCCTCCACTAAATCTTTCTCGGCTTCCTATCGCACTGCAGGAGAAAAATTCATCGTCTTTCCGACCCTCAGTGATTGTTATTATC GCATCTTTATGCGGTGTGACCACTCTTCTGTTTGTAATACTGTTCTTTCTTACGGTGTATAAAATAAAGTGGCGGCAATCTGAGGCTCTTGAAGACTGGG AATTGGAGTGTCCACACAGGTTTCGCTATCAAGATCTTTATACAGCAACTAAGGGTTTTAAAAAGAGTGAGATCATCGGAGTGGGTGGGTTTGGCGCAGT GTACAAAGGTAGATTGCCTACAAATGGAAACGAAGTTGCTGTTAAGAAGATCAATAACAACTCAATCCAGGGTTTGAGAGAATTCACTGCGGAGATTGAA AGCCTGGGACGTTTACGGCACAAGAACTTGGTGAATCTCCAAGGATGGTGCAAGAAAAATAATGACCTCCTCCTAGTTTATGACTTCATCCCAAATGGAA GCCTGGCCGGTCTCCTCTTCAGTCGGATAAATAACTTTGTATTGAGCTGGGAGCAAAGATTCAATATTGTTAAAGGCGTTGCAGCAGGGCTTTTGTATTT GCATGAGGAATGGGAGCAAGTGGTGATTCACAGAGATGTCAAGTCAGGCAATGTCTTGATAGATGCAGAAATGAACGGGCGGCTAGGAGACTTTGGTCTA GCCAGGTTGTATGATCATGGCACGATGTCGCACACCACAAATATTGTTGGCACGATAGGGTATCTTGCACCTGAATTGACACGCACTGGCCAGTCTTCTA CCAGCTCCGATGTGTATGCATACGGTATTTTGCTTCTTGAAGTGGCTTGTGGCAGAAAACCCGTTGAAACTAGTAACTTCATTCTGATAGATTCAGTGAT TGAATACCATCAAATGGGTAGAGTTATTGATGCAGCTGATCCAAAGCTGAACTCTGCATTCGTGGTCAAAGAAATGGAGTTGGTCCTAGGGTTGGGTCTT CTTTGTTCTCATCGCAAACCTAAAGCCAGGCCAACCATGAGACAAGTTATACGGTATCTTAACTGGGAAGATAAGCTTCCTGTAATTGATGATTTGGGCT CTCCTGATTCTCTGCGTGGGAGCACAAAATTTATGGAAGTTTCGGTTTCCAGTAACACGATCACAGGATCATATCCTTCATCTTCCATCGGTTACATGAC TTCAAGTTCTATGGATGCAGGCAGATAG
AA sequence Show only first row Show all	>Potri.006G103200.1 pacid=42770530 polypeptide=Potri.006G103200.1.p locus=Potri.006G103200 ID=Potri.006G103200.1.v4.1 annot-version=v4.1 MASTIYLVLLFLFFCMVAEAQDVEFLFNGFNGSEANLTLDKVSIIKPSGLLRLTNKTQNAVGHAFYSEKVQMLNRSSSSSPNASSFSTAFVFQIISPSKG EGGFGFAFTLSPSDRLPGAEARHYLGLFNSTNDGSSSNYIFAVEFDTVNGFNESTDSVGNHVGININSVDSKAGKPASYNDDVDRLDSFEELVLESGQPI QAWVEYNGVTKCINVTIAPMDHGKPIEPLISFPQDLSTYVREDMYVGFSASTGNKASSHYILGWSFSTKGEAPPLNLSRLPIALQEKNSSSFRPSVIVII ASLCGVTTLLFVILFFLTVYKIKWRQSEALEDWELECPHRFRYQDLYTATKGFKKSEIIGVGGFGAVYKGRLPTNGNEVAVKKINNNSIQGLREFTAEIE SLGRLRHKNLVNLQGWCKKNNDLLLVYDFIPNGSLAGLLFSRINNFVLSWEQRFNIVKGVAAGLLYLHEEWEQVVIHRDVKSGNVLIDAEMNGRLGDFGL ARLYDHGTMSHTTNIVGTIGYLAPELTRTGQSSTSSDVYAYGILLLEVACGRKPVETSNFILIDSVIEYHQMGRVIDAADPKLNSAFVVKEMELVLGLGL LCSHRKPKARPTMRQVIRYLNWEDKLPVIDDLGSPDSLRGSTKFMEVSVSSNTITGSYPSSSIGYMTSSSMDAGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08870			Concanavalin A-like lectin pro...		Potri.006G103200 [exp]	0	1
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Potri.002G236400 [exp]	1.73	0.9579	IAGLU.2
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.011G062600 [exp]	4.89	0.9519
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.002G236500 [exp]	5.74	0.9319
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Potri.009G030700 [exp]	7.34	0.9328
AT1G11340			S-locus lectin protein kinase ...		Potri.004G028300 [exp]	8.83	0.9164
AT3G20140		CYP705A23	"cytochrome P450, family 705, ...		Potri.009G066300 [exp]	10.19	0.9337
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.001G168000 [exp]	10.77	0.9362
AT1G02260			Divalent ion symporter (.1)		Potri.017G141650 [exp]	11.22	0.9202
AT1G02260			Divalent ion symporter (.1)		Potri.017G141600 [exp]	11.53	0.9223
AT1G18980			RmlC-like cupins superfamily p...		Potri.015G068200 [exp]	12.36	0.9227

Compare expression of checked genes

Potri.006G103200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.