Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08943 1294 / 0 ARM repeat superfamily protein (.1) AT3G08947 1290 / 0 ARM repeat superfamily protein (.1) AT5G53480 981 / 0 ARM repeat superfamily protein (.1) AT2G16950 109 / 3e-24 ATTRN1 transportin 1 (.1.2) AT2G16960 66 / 7e-11 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G123600 [exp] 1615 / 0 AT3G08943 1288 / 0.0 ARM repeat superfamily protein (.1) Potri.015G010400 [exp] 1034 / 0 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.012G017500 [exp] 1032 / 0 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.009G138200 [exp] 94 / 2e-19 AT2G16950 1316 / 0.0 transportin 1 (.1.2) Potri.004G177700 [exp] 81 / 3e-15 AT2G16950 1279 / 0.0 transportin 1 (.1.2) Potri.016G119900 [exp] 48 / 3e-05 AT3G08960 1547 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008864 [exp] 1010 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 1008 / 0 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 1008 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10041453 [exp] 983 / 0 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10034318 [exp] 981 / 0 AT5G53480 1332 / 0.0 ARM repeat superfamily protein (.1) Lus10023247 [exp] 356 / 4e-113 AT5G53480 509 / 3e-172 ARM repeat superfamily protein (.1) Lus10025083 [exp] 89 / 9e-18 AT2G16950 1392 / 0.0 transportin 1 (.1.2) Lus10023999 [exp] 89 / 1e-17 AT2G16950 1380 / 0.0 transportin 1 (.1.2) Lus10031905 [exp] 75 / 7e-16 AT5G53480 106 / 7e-28 ARM repeat superfamily protein (.1) Lus10014540 [exp] 49 / 3e-06 AT5G53480 106 / 1e-26 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13513 [poplar] [flax] HEAT_EZ HEAT-like repeat
Representative CDS sequence Show only first row Show all	>Potri.006G103300.1 pacid=42770142 polypeptide=Potri.006G103300.1.p locus=Potri.006G103300 ID=Potri.006G103300.1.v4.1 annot-version=v4.1 ATGGCATTGGAGATCACTCAGTTTCTATTGGCTGCCCAATCACCGGATGCAAATATCCGTACTCAGGCAGAGGCCAGTCTTAGGCAGTTCCAAGAGCAGA ACTTGCCCCTTTTCCTTCTATCCTTGTCAGTGGAGCTTGCAAACAATGTAAAGCCTTTAGAATCACGTAGATTGGCTGGTATTGTTCTTAAAAACTCTTT AGATGCTAAAGATTCTGTGAGAAAGGAACATCTTGTTCAACAATGGATGACAATTGAAATTTCTATCAAATCACAAATCAAAGACTCACTCTTGAGAACT CTTGGGTCATCTGCATCGGAAGCAAGGCACACTTCTGCCCAAGTAATTGCAAAAGTTGCTTCCATTGAGATTCCACGGAAGCAGTGGCCTGAGCTCATCG GATCATTGCTTAATAATATGACCCAGCAAGATAGTCCGGTAGCTTTGAAACAGGCGACCCTGGAAACTCTTGGATATGTTTGTGAGGTGATATCGCATCA GGATCTTGTGCAGGATGAAGTTAACTCTGTTCTCACTGCTGTTGTCCAAGGCATGAACCTTGCTGAACACAGTCATGAAGTACGTCTTGCAGCAACAAAG GCCTTGTATAATGCCTTAGATTTTGCCCAGACCAACTTTGACAATGAAATGGAGCGCAATTACATCATGAAGGTGGTATGTGAAACAGCAATTTCCAAAG AGGCGGATATCAGGCAGGCTGCTTTCGAGTGTCTTGTTTCTATAGCATCAACATACTATGAGGTGCTTGAACCTTATATGCAGACCCTCTTCCAGCTAAC ATCAAATGCTGTAAAAGGGGATGAAGAGAGTGTTGCCCTCCAAGCAATTGAATTCTGGAGCTCCATCTGCGATGAAGAGATAGAGCTTCAAGAATATGGG ACTGTTGAAGGTGGGGATTCTGGGTCTGCTCATTCACGCTTCATAGAAAAGGCCCTCCCATATCTTGTTCCTTTGTTGTTGGATACTATGTTGAAACAGG AGGATCAGGATCAGGATGATAGCATTTGGAATATATCCATGGCAGGGGGAACCTGTCTTGGTCTTGTTGCTAGAACTGTTGGGGATTCTATTGTGAAACT TGTAATGCCCTTTGTCGAGGGTAATATTCTTAACCCAGATTGGCATTGTCGCGAGGCAGCCACATATGCATTTGGCTCAATTCTAGAAGGCCCTAGCGTT GAAACATTGGGTCCACTTGTTACTAATGGCTTGGATTTTCTGCTTAATGCAATAAGGGATGAAAATAATAATGTCAAGGACACAACTGCCTGGACGCTTA GTCGTATATTTGAGTTTTTGCACTGTCCTGCCAGTGGATTTTCTGTGATTTCCCCGGAGAAGCTGGAAAGAATTGTAACTGTCTTGCTGGAGAGTATTAA TGATGCTCCACATGTAGCTGAAAAGGTTTGTGGGGCAATCTATTACCTTGCACAGGGATATGAAGATTCTGGAACAAGTTCCTCGCTTCTAACTCAACAC ATCCCTAGGATTATCTCTGAACTTCTCAAAACTGCTGAGCGGACAGATGGGAGCGACTTTAAGCTCAGGACTTCTGCTTATGAGACATTGAACGAGGTTG TTAGGTCTTCCAATGTTGTGGAAACATCACTAATTATTTTGGAGCTGCTCAAAAGCATCTTGCATAAGTTGGGGCAGACTCTAGAGCTTCAAATTGTCTC ATCAGATGATAGAGAGAAGCAAGGGGACTTGCAAGCTTCCCTTTGTGCTGTTATCCAGGTGATCATCCAAAAGCTTAGCAGCACTGATGAGACTAAGCCC AGTACACTTCAGGCAGCAGATCCAATTATGATTCTGCTCCTCAGGGTTTTTGCTTGCCGCAGCTCTACTGTGCATGAGGAAGCAATGCTTGCAATCGGTG CACTGGCTCATGCCTCTGGTCCAGAATTCGAGAAGTATATGCCTGAGTTATACAAATACCTGGAGATGGGACTACAGAATTTTGAGGAGTACGAGGTTTG TGCCATCACAGTTGGGGTGATTGGTGACATTTGCCGCGCACTGGAGGACAAGGTTTTACCATACTGTGATGGGATCATGAACCACCTTGTCTGCAATCTC CAAAGTGCTGAACTCAACCGGTCGGTCAAGCCTCCCATATTCTCCTGCTTTGGGGACATTGCTCTTGCTATAGGCGAGCAATTCTCTAAGTACATTGAGC CTACAGTAGCAATGATGCGGAGTGCTGCTGAGGTCTGTGCTCAGATGGATAATAGTGATGAGGAGTTGATGGATTATGGCAACCAGCTTAAGCGTAGCAT ATTTGAAGCTTATTCTGGTATTCTTCAGGGATTCAAAGATTCCAAGCCTGAGTTGATGCTGCCACATGCTGGTCACCTTTTCCAGTTCATAGAATTGGTT TTCAGAGAGAAATATAGGGATGAGAGTGTTACAAAAGCAGCAGTTGCGGTGATGGGTGATCTGGCAGATGCCCTTGGTCCAAACACGAAAATACTGTTTA AAGACAAAGCATTCTGCGTTCAATTCCTCGGCGAGTGTCTTCAATCTGAAGATGAACATCTCAAAGAGACTGCAAATTGGACCCAAGTGATGATTGCTCG TGTTGTTTCATGA
AA sequence Show only first row Show all	>Potri.006G103300.1 pacid=42770142 polypeptide=Potri.006G103300.1.p locus=Potri.006G103300 ID=Potri.006G103300.1.v4.1 annot-version=v4.1 MALEITQFLLAAQSPDANIRTQAEASLRQFQEQNLPLFLLSLSVELANNVKPLESRRLAGIVLKNSLDAKDSVRKEHLVQQWMTIEISIKSQIKDSLLRT LGSSASEARHTSAQVIAKVASIEIPRKQWPELIGSLLNNMTQQDSPVALKQATLETLGYVCEVISHQDLVQDEVNSVLTAVVQGMNLAEHSHEVRLAATK ALYNALDFAQTNFDNEMERNYIMKVVCETAISKEADIRQAAFECLVSIASTYYEVLEPYMQTLFQLTSNAVKGDEESVALQAIEFWSSICDEEIELQEYG TVEGGDSGSAHSRFIEKALPYLVPLLLDTMLKQEDQDQDDSIWNISMAGGTCLGLVARTVGDSIVKLVMPFVEGNILNPDWHCREAATYAFGSILEGPSV ETLGPLVTNGLDFLLNAIRDENNNVKDTTAWTLSRIFEFLHCPASGFSVISPEKLERIVTVLLESINDAPHVAEKVCGAIYYLAQGYEDSGTSSSLLTQH IPRIISELLKTAERTDGSDFKLRTSAYETLNEVVRSSNVVETSLIILELLKSILHKLGQTLELQIVSSDDREKQGDLQASLCAVIQVIIQKLSSTDETKP STLQAADPIMILLLRVFACRSSTVHEEAMLAIGALAHASGPEFEKYMPELYKYLEMGLQNFEEYEVCAITVGVIGDICRALEDKVLPYCDGIMNHLVCNL QSAELNRSVKPPIFSCFGDIALAIGEQFSKYIEPTVAMMRSAAEVCAQMDNSDEELMDYGNQLKRSIFEAYSGILQGFKDSKPELMLPHAGHLFQFIELV FREKYRDESVTKAAVAVMGDLADALGPNTKILFKDKAFCVQFLGECLQSEDEHLKETANWTQVMIARVVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08943			ARM repeat superfamily protein...		Potri.006G103300 [exp]	0	1
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.011G031200 [exp]	7.61	0.9265	ATK1.2
AT1G16870			mitochondrial 28S ribosomal pr...		Potri.013G153900 [exp]	8.94	0.8783
AT1G10780			F-box/RNI-like superfamily pro...		Potri.003G019400 [exp]	11.61	0.8773
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Potri.005G142200 [exp]	12.96	0.9093
AT1G59540		ZCF125	P-loop containing nucleoside t...		Potri.014G013300 [exp]	17.54	0.8310	Pt-ZCF125.1
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.003G042700 [exp]	21.07	0.9066
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.005G209600 [exp]	22.13	0.8994	Pt-RANGAP1.1
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.014G125100 [exp]	22.47	0.9054	ATCSLD5.1
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	23.66	0.9059
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Potri.002G003400 [exp]	24.49	0.8983	CDKB2.1

Compare expression of checked genes

Potri.006G103300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.