Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51770 1399 / 0 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT5G58550 950 / 0 EOL2 ETO1-like 2 (.1.2) AT4G02680 809 / 0 EOL1 ETO1-like 1 (.1) AT3G04240 46 / 0.0002 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G123800 [exp] 1677 / 0 AT3G51770 1415 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.009G075300 [exp] 1187 / 0 AT3G51770 1206 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.001G280100 [exp] 1178 / 0 AT3G51770 1192 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.002G048300 [exp] 868 / 0 AT4G02680 1293 / 0.0 ETO1-like 1 (.1) Potri.005G214400 [exp] 860 / 0 AT4G02680 1264 / 0.0 ETO1-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022660 [exp] 1158 / 0 AT3G51770 1231 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10002206 [exp] 1049 / 0 AT3G51770 1089 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012238 [exp] 1043 / 0 AT3G51770 1092 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031859 [exp] 1021 / 0 AT3G51770 1088 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031289 [exp] 1015 / 0 AT3G51770 1083 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022084 [exp] 837 / 0 AT4G02680 1267 / 0.0 ETO1-like 1 (.1) Lus10012472 [exp] 197 / 7e-58 AT3G51770 230 / 2e-70 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010040 [exp] 144 / 5e-40 AT3G51770 165 / 3e-48 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012510 [exp] 174 / 4e-35 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010041 [exp] 76 / 2e-16 AT3G51770 76 / 3e-17 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.006G103400.3 pacid=42769677 polypeptide=Potri.006G103400.3.p locus=Potri.006G103400 ID=Potri.006G103400.3.v4.1 annot-version=v4.1 ATGCAACACAATATATTCACAACAATGCGTAGCGTAAAACTCTCGGAAGGATGTAAAGTAACTCAAGTTTATGCTTTCAATCCAACCGGCGGAGAAGCCG GTGGCGGTGGTTATGGCGGTAAAGTTGGAGGGAAGTTCTTACAACATCTACAAGATCTAAGAGCTAATTCAATTCGGACGAAATGGAGTCGAAATTCCCA TCCACCGACTAACCATAACCAAACGACAAGAACAAATGTCTCTGTCGAAAGTTTATTGCCAGCTGGTCTTCCGACCGTTGATCTCATCGAGCCAAAGATT GAGCCTTGTCTTAAATCTGTGGATTTCGTCGAATCATTAGCTGATGTCTATACAAAAGTCGAGAATTCTTCGCAACTGGAGAAATCAGACAGATTTCTTG AGCAATGTGCGGTGTTTAAGGGTTTGTCTGATCCGAAATTGTTTCGGAATAGTCTAAGGAGTGCGAGGCAGCATGCTGTGGATGTGCATTCCAAGGTTGT TTTGGCTTCGTGGTTGAAGTTTGAGAGGGGGGAGGATGAATTGATTGGTTTGTCGGCTATGGATTGCTGTGGAAGAAATTTAGAATGTCCTAGGGCCTGT TTGATGTCGGGATATGATCCCGACTCAGTGAAGGATTCCTGCGTGTGTTTGAGAGGGCAGCCGGAGGAGGATGTTTTGATGGGGGATGAAGAATACTTGA CTTTTGATGCTGATGAGGGTGGTGGTGGTGATGATGATTGTGATATGTCATTTTGCATTGGTGATGATGAAATTAGGTGTGTAAGATATAATGTGGCATC ACTTTCTAGACCTTTTAGAGCAATGTTGTATGGGGAGTTTAAGGAATCCAGGAGGGAGAAGATAAATTTTACGCAGAATGGGATATCGGCAGAGGGAATG AGAGGGGCGATGGTGTTTAGCCAGACGAAAAGATTGGGCACGTTTGATCCAAAGATTGTTTTGGAGCTTCTTTCTTTGGCAAACAGGTTTTGCTGTGAGG AATTGAAGTCAGCTTGCGATGCTCATTTGGCATCCTTGGTTTGTGATATGGAGAGTGCCGTGATTCTAATTGAGTATGGATTGGAGGAAGGTGCAAACCT TTTGGTGGCAGCTTGTTTACAGGTGTTTTTGAGAGAGCTTCCATTTTCAATGAACAATCCTTATGTGATGCGACTGTTGTGTGGATCTGAGGGTAGGGAG AGATTGGCTTCGGTTGGCCATGCTTCATTTTTGTTGTATTATTTTCTGAGCCAGATTGCTATGGAGGAAGAGATGAAATCTAACAACACTGTGATGCTTT TGGAGAGACTGGGAGAGTGTGCAACCGAAGATTGGCAGAAACAGCTTGCCTATCACCTCTTAGGTGTTGTTATGCTCGAAAGAAAAGAGTACAAAGATGC CCAGAACTGGTTTGAAGAAGCAGTTGAAGCAGGTCATATATACTCGTCGGTGGGTGTTGCAAGGGCTAAATACCATCGTGGCCACAAGTATTCAGCATAC AAGATGATGAACTCGCTGATATCTGATCATTCACCAGTTGGTTGGATGTATCAAGAGAGGTCTTTGTTTTGTACTGGGAAGGAAAAATTGATGGATTTGA ACACAGCAACTGAATTGGATCCAACACTTCCATTCCCATACATGTGTCGGGCTGTTTTGTTGGTGCAGGAGAACAAACTTGAACCAGCCATCTCAGAACT CAATAAAATTATTGGTTTCAAGGTCTCTCCTGATTGCCTTGAATTACGGGCCTGGATTTCTATGGCATTGGAGGATTTTGAAGGGGCTCTCAGAGATGTC CGGGCACTTTTGACGTTGGATCCAAATCACACGATGTTTTATGGGAAGAAGCATGGTGACCAACTAGTAGAACTCCTCCGTCCCCTTGTTCAGCAATGCA GTCAGGCAGACTGCTGGATGCAACTGTATGATAGATGGTCCTCTGTTGATGATATAGGCTCCCTAGCTGTCGTACACCAAATGTTGGCAAATGGCCCCTG GAAGAGCCTTCTACGGTTCCGACAATCTCTCCTCCTTTTACGGCTAAATTGTCAAAAGGCTGCAATGCGTAGTTTGCGGCTGGCTAGAAATTATTCTACT TCCGACCATGAAAGACTTGTCTATGAAGGATGGATCTTGTATGACACTGGAAATCATGAAGAAGCACTATCCAAGGCCGAGGAGTCTATTTCAATTCAGA GATCGTTTGAAGCTTTTTTCCTTAAAGCATATGCTTTAGCAGATTCAAGTCTTGATCCTGAGTCCTCAAAGTATGTTATTCAACTTTTGGAGGAAGCTCT TAGGTGCCCTTCAGATGGCCTTCGGAAAGGACAAGCACTGAACAATCTTGGGAGTGTATATGTTGATTGTGAGAAGTTGGATCTTGCTGCTGACTGTTAC ATGAGTGCACTAGAGATCAAGCATACAAGAGCACATCAGGGTCTGGCACGTGTACATCATCTAAAAAATCAAAGGAAAGCAGCATATGATGAGATGACAA AACTGATAGAAAAAGCTAGGAATAATGCTTCAGCTTATGAGAAGCGTTCAGAGTATTGTGATCGTGACATGGCAAAAAGTGATCTAAGCATGGCAACACA ACTAGATCCACTAAGAACATATCCATACAGACACAGGGCAGCAGTTTTAATGGATGACCACAAAGAAGTGGAAGCCATAAAAGAGCTTACAAGGGTCATA GCTTTCAAGCCAGACTTACAGCTGCTGCATCTTCGAGCAGCATTTTATGATTCAATGGGTGATAATGGCTCCACCCTTCGAGACTGTGAAGCAGCTCTCT GTCTTGACCCCAATCACAAAGGTACCATCGAGCTCTATAAGAGAATATGGCGGGGTAATGAACAAGAAAAATGA
AA sequence Show only first row Show all	>Potri.006G103400.3 pacid=42769677 polypeptide=Potri.006G103400.3.p locus=Potri.006G103400 ID=Potri.006G103400.3.v4.1 annot-version=v4.1 MQHNIFTTMRSVKLSEGCKVTQVYAFNPTGGEAGGGGYGGKVGGKFLQHLQDLRANSIRTKWSRNSHPPTNHNQTTRTNVSVESLLPAGLPTVDLIEPKI EPCLKSVDFVESLADVYTKVENSSQLEKSDRFLEQCAVFKGLSDPKLFRNSLRSARQHAVDVHSKVVLASWLKFERGEDELIGLSAMDCCGRNLECPRAC LMSGYDPDSVKDSCVCLRGQPEEDVLMGDEEYLTFDADEGGGGDDDCDMSFCIGDDEIRCVRYNVASLSRPFRAMLYGEFKESRREKINFTQNGISAEGM RGAMVFSQTKRLGTFDPKIVLELLSLANRFCCEELKSACDAHLASLVCDMESAVILIEYGLEEGANLLVAACLQVFLRELPFSMNNPYVMRLLCGSEGRE RLASVGHASFLLYYFLSQIAMEEEMKSNNTVMLLERLGECATEDWQKQLAYHLLGVVMLERKEYKDAQNWFEEAVEAGHIYSSVGVARAKYHRGHKYSAY KMMNSLISDHSPVGWMYQERSLFCTGKEKLMDLNTATELDPTLPFPYMCRAVLLVQENKLEPAISELNKIIGFKVSPDCLELRAWISMALEDFEGALRDV RALLTLDPNHTMFYGKKHGDQLVELLRPLVQQCSQADCWMQLYDRWSSVDDIGSLAVVHQMLANGPWKSLLRFRQSLLLLRLNCQKAAMRSLRLARNYST SDHERLVYEGWILYDTGNHEEALSKAEESISIQRSFEAFFLKAYALADSSLDPESSKYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCY MSALEIKHTRAHQGLARVHHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPLRTYPYRHRAAVLMDDHKEVEAIKELTRVI AFKPDLQLLHLRAAFYDSMGDNGSTLRDCEAALCLDPNHKGTIELYKRIWRGNEQEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.006G103400 [exp]	0	1
AT4G34270			TIP41-like family protein (.1)		Potri.009G093200 [exp]	2.23	0.7856
AT5G16890			Exostosin family protein (.1)		Potri.019G049800 [exp]	3.00	0.7719
AT1G54920			unknown protein		Potri.013G023600 [exp]	7.68	0.8069
AT2G23140			RING/U-box superfamily protein...		Potri.005G144700 [exp]	7.74	0.7693
AT1G03080			kinase interacting (KIP1-like)...		Potri.005G213400 [exp]	15.36	0.7138
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.014G082400 [exp]	17.74	0.7248
AT1G06320			unknown protein		Potri.005G202500 [exp]	22.44	0.7565
AT5G44860			unknown protein		Potri.012G125800 [exp]	31.08	0.7791
AT2G18030			Peptide methionine sulfoxide r...		Potri.007G012900 [exp]	38.79	0.7767	PtrcMsrA5
AT2G32900		ATZW10	centromere/kinetochore protein...		Potri.002G223600 [exp]	48.53	0.6918	Pt-ZW10.1

Compare expression of checked genes

Potri.006G103400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.