Plant FIBer expression Database

Potri.006G103900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01600 262 / 3e-88 ATFER1 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
AT2G40300 256 / 6e-86 ATFER4 ferritin 4 (.1)
AT3G11050 240 / 2e-79 ATFER2 ferritin 2 (.1)
AT3G56090 235 / 2e-77 ATFER3 ferritin 3 (.1)
AT3G61010 96 / 2e-22 Ferritin/ribonucleotide reductase-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G124700
[exp]
343 / 2e-120 AT5G01600 294 / 8e-101 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Potri.016G124900
[exp]
332 / 1e-115 AT5G01600 264 / 4e-89 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Potri.010G184500
[exp]
275 / 3e-93 AT3G11050 311 / 2e-107 ferritin 2 (.1)
Potri.008G072700
[exp]
271 / 2e-91 AT3G11050 330 / 9e-115 ferritin 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012233
[exp]
303 / 2e-104 AT5G01600 333 / 4e-116 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10002865
[exp]
298 / 3e-102 AT5G01600 331 / 2e-115 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10022673
[exp]
273 / 1e-92 AT5G01600 339 / 1e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10012499
[exp]
272 / 7e-92 AT5G01600 338 / 3e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10007523
[exp]
265 / 4e-89 AT2G40300 360 / 4e-127 ferritin 4 (.1)
Lus10017433
[exp]
262 / 3e-88 AT2G40300 366 / 3e-129 ferritin 4 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0044 Ferritin PF00210 Ferritin Ferritin-like domain
Representative CDS sequence
>Potri.006G103900.2 pacid=42767544 polypeptide=Potri.006G103900.2.p locus=Potri.006G103900 ID=Potri.006G103900.2.v4.1 annot-version=v4.1
ATGGCAGCAACGTTTTTGAGCCCTGTTCCAGCCTTTTCTCTTGCAGCAAAGCAAGGGGATACTGCTCGTGTCCTAATCACTAGTCCTACAAGTGATGGGC
ATGGCATTTCTTGTTCTTCTGTTTCAGCCTTTCCTTCGGCTTCAAGAAAGAAAAGAAACACCAGTCTTGTAGTTTCTGCCACTGGAGAAACTCTTACTGG
TGTTGTTTTCCAGCCATTTGAAGAGGTGAAGAAGGAGGTCTTTGTTGTACCTAATTCTCCTCAAGTTTCTTTTGCTCGTCAGTACTTTGTGGATGAGTGT
GAAGCTGCCATTAATGAGCAGATCAATGTGGAGTACACAGCTTCCTATGTATACCATGCCATGTTTGCCTATTTTGACAGGGATAACATTGCTCTCAAAG
GCCTAGCCAAATTCTTCAAGGAGTCAAGTGAAGAAGAAAGAGAACATGCTGAAAAGCTCATGGAATATCAGAATATACGAGGAGGGAAAGTAGTACTTCA
CTCTATACTGACATCCCCTTCTGAATTTGAGCATGTTGAGAAAGGAGATGCATTATATGCAATGGAATTAGCATTGTCTTTGGAGAAGTTGACAAATGAG
AAACTGCTGAGCTTGCACAAGGTGGCAGACGAGAACAATGATCCACAAATGGCAGATTTCGTCGAGAGCGAATTTTTAACCGAACAGGTTGAATCCATTA
AGAAGATAGCTGAATATGTCGCTCAACTGCGGATGGTTGGGAAAGGCCATGGAGTATGGCACTTTGATCAGATGCTCCTCAATTAG
AA sequence
>Potri.006G103900.2 pacid=42767544 polypeptide=Potri.006G103900.2.p locus=Potri.006G103900 ID=Potri.006G103900.2.v4.1 annot-version=v4.1
MAATFLSPVPAFSLAAKQGDTARVLITSPTSDGHGISCSSVSAFPSASRKKRNTSLVVSATGETLTGVVFQPFEEVKKEVFVVPNSPQVSFARQYFVDEC
EAAINEQINVEYTASYVYHAMFAYFDRDNIALKGLAKFFKESSEEEREHAEKLMEYQNIRGGKVVLHSILTSPSEFEHVEKGDALYAMELALSLEKLTNE
KLLSLHKVADENNDPQMADFVESEFLTEQVESIKKIAEYVAQLRMVGKGHGVWHFDQMLLN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G01600 ATFER1 ARABIDOPSIS THALIANA FERRETIN ... Potri.006G103900
[exp]
0 1
Potri.004G022300
[exp]
2.00 0.9528
AT1G37140 MCT1 MEI2 C-terminal RRM only like ... Potri.002G088200
[exp]
3.46 0.9592
AT2G46950 CYP709B2 "cytochrome P450, family 709, ... Potri.006G022200
[exp]
3.46 0.9620 Pt-CYP709.2
AT5G06860 ATPGIP1, PGIP1 polygalacturonase inhibiting p... Potri.016G049600
[exp]
3.60 0.9459 PGIP.2
AT5G67060 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-hel... Potri.007G044600
[exp]
5.47 0.9501
AT5G53980 HD ATHB52 homeobox protein 52 (.1) Potri.011G114500
[exp]
5.47 0.9407
AT3G18010 HD WOX1 WUSCHEL related homeobox 1 (.1... Potri.010G111400
[exp]
5.91 0.9512
Potri.001G459001
[exp]
6.48 0.9570
Potri.016G037100
[exp]
7.93 0.9078
AT2G39370 MAKR4 MEMBRANE-ASSOCIATED KINASE REG... Potri.006G214700
[exp]
8.66 0.9002

Potri.006G103900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.