Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RHG1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51740 997 / 0 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT3G56100 761 / 0 IMK3, MRLK meristematic receptor-like kinase (.1) AT2G26730 343 / 5e-107 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 321 / 4e-99 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58300 311 / 4e-95 Leucine-rich repeat protein kinase family protein (.1.2) AT5G62230 317 / 2e-94 ERL1 ERECTA-like 1 (.1.2) AT5G63930 317 / 2e-93 Leucine-rich repeat protein kinase family protein (.1) AT1G75640 314 / 2e-92 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07180 307 / 6e-91 ERL2 ERECTA-like 2 (.1) AT3G56370 304 / 9e-90 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126300 [exp] 1358 / 0 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.010G183400 [exp] 1036 / 0 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.019G131500 [exp] 327 / 3e-101 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G091000 [exp] 333 / 1e-100 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 325 / 2e-100 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G137000 [exp] 332 / 5e-100 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 332 / 6e-100 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 320 / 2e-98 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.006G108600 [exp] 322 / 3e-96 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022679 [exp] 922 / 0 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 914 / 0 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 879 / 0 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 847 / 0 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012225 [exp] 673 / 0 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10025223 [exp] 335 / 3e-101 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 332 / 3e-100 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039872 [exp] 322 / 6e-98 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10031689 [exp] 327 / 1e-97 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10022738 [exp] 325 / 1e-97 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G104300.1 pacid=42768829 polypeptide=Potri.006G104300.1.p locus=Potri.006G104300 ID=Potri.006G104300.1.v4.1 annot-version=v4.1 ATGGAAAATACTTGTCACTTCCGCGACAAGTACTTTCTTTACACACACTTGTGCTTGTTTCTACTGGTTTTTTTGCCCCAATTTGCTTCAAGCCAAAAAT GGGATGGTGTAATGGTCACCCGAGCAGATTATCAAGCTCTTCGAGCTATAAGGAATGAACTAGTCGACTTCAAAGGGTTTTTACGAAGCTGGAATGGTAG TGGATATGGAGCTTGCTCTGGTCGGTGGGCAGGAATCAAATGTGTCAAAGGACAAGTTATTGCTATCCAGCTTCCTTGGAAGGGACTAGGTGGCAGAATC TCTGAGAAGATTGGCCAGCTTCAAGCACTCAGAAAGATTAGTTTGCATGACAATGTACTTGGTGGTACTGTCCCTAGGTCTCTTGGTTTGCTTCACAATC TTAGAGGGGTTTACCTCTTCAACAACCGACTTTCGGGTTCTATCCCTCCTTCCATTGGTAACTGTCCTGTTCTCCTGACTCTTGATGTAAGTAACAATTC TCTCACTGGCGCAATTCCTCCTAGTCTTGCGAATTCTACAAGGTTATATAGACTTAATCTGAGCTTTAATTCATTAATGGGGTCGATCCCAGTTAGTCTT ACTCAGTCCCCTTCTCTCATAGTTCTTGCTCTCCAACACAACTACCTCTCTGGGTCGATCCCGGATACTTGGGGGAGAAAAGGAAACTATTCTTATCACC TTCAGTTCTTGATCCTTGATCATAACCTCATTTCTGGAACTATTCCTGTTAGTCTTAACAAGTTGGCTTTACTTCAAGAGATTTCTCTTAGTCATAACAA GCTTTCCGGGGCCATACCCAATGAAATGGGGAGTCTCTCAAGGCTTCAAAAGCTTGATTTTTCGAACAATGCTTTCAATGGAAGTATTCCATCTAGCCTC TCCAATCTCACCTCTTTAGCCTCACTGAATCTAGAGGGAAACCGTCTCGACAACCAGATCCCAGATGGTTTTGATAGATTACACAACCTCTCAGTGCTAA ACCTGAAAAATAATCAGTTCATAGGCCCCATCCCAGCTTCTATTGGAAACATTTCCAGTGTCAACCAGCTTGATTTAGCCCAAAATAATTTTAGTGGAGA AATTCCAGCTTCTCTTGTTCGCCTAGCCACTCTCACTTACTTCAATGTTTCTTATAACAATCTTTCTGGTTCTGTTCCCTCTTCCCTTGCTAAGAAGTTC AATTCAAGCTCTTTTGTGGGAAATCTTCAGCTATGTGGCTACAGCTTTTCAACCCCATGTCTTTCACCCCCACCTATAGTTCTTCCAACTCCAACAAAAG AAGAACCAAAACGTCATCGCCGGAAATTTAGCACTAAAGATATTATTCTCATAGCAGCTGGTGTCCTCTTAGCTGTGCTGCTTCTTCTCTGCTTCATTCT GCTATGTTGTTTGATGAAGAAAAGGTCTGCTTCAAAAGGAAAGCATGGTAAAACTACTATGCGGGGGCTCCCAGGGGAAAGTGAGAAGACAGGTGCTGTG GCAGGTCCTGAAGTTGAATCTGGAGGTGAAATGGGTGGGAAATTAGTCCACTTTGATGGGCAATTTGTGTTTACAGCAGATGATTTGTTGTGTGCAACTG CGGAGATAATGGGGAAGAGTAGTTATGGAACAGCTTACAAGGCAACATTAGAGGATGGCAGTCAAGTTGCAGTGAAAAGGTTGAGGGAGAAGACTACAAA GGGGCAGATGGAGTTTGAAACAGAGGCTGCTGCTCTCGGTAAGATTCGGCACCCGAATCTCTTAGCACTGAGGGCCTATTATTTGGGTCCCAAGGGAGAG AAGCTTCTTGTTTTTGACTATATGCCCATAGGGAGTCTTGCATCCTACCTCCATGCTCGTGGGCCTGAAATCGCTGTCGATTGGCCAACAAGGATGAACA TAGCCATTGGTGTTGCGCGTGGACTAAACCATCTCCACACCCAGCAGGAGATCATTCATGGGAATCTCACATCAAGCAACATATTACTCGACGAGCAAAC TAATGCTCACATTGCGGACTTTGGCCTCTCCAGGCTCATGACTACTACTGCCAACACCACCGTGATTTCCACTGTTGGAACACTTGGCTATCGTGCACCA GAGCTCTCAAAACTCAAGAATGCCAACACAAAGACTGATGTCTACAGCCTTGGAGTGATCATTTTGGAGCTTCTGACCGGGAAATCACCAGGTGAACCAA TGAATGGCATGGATTTGCCTCAATGGGTTGCATCCATTGTGAAGGAGGAGTGGACTAATGAAATCTTTGATTTAGAGCTCGTGAGGGATTCACAAGCTAT AGGTGATGAGTTACTTAACACATTGAAATTAGCTCTGCATTGTGTTGATCCCACACCAACTGCTCGTCCTGAAGCCGAAGAAGTTGTTCAGCAACTTGAG GAGATTAAGCCAGAGCTAGCTGCTGCTCCTGCTGATGATGGAGCCAAAGTACCGACGACTGAGTAG
AA sequence Show only first row Show all	>Potri.006G104300.1 pacid=42768829 polypeptide=Potri.006G104300.1.p locus=Potri.006G104300 ID=Potri.006G104300.1.v4.1 annot-version=v4.1 MENTCHFRDKYFLYTHLCLFLLVFLPQFASSQKWDGVMVTRADYQALRAIRNELVDFKGFLRSWNGSGYGACSGRWAGIKCVKGQVIAIQLPWKGLGGRI SEKIGQLQALRKISLHDNVLGGTVPRSLGLLHNLRGVYLFNNRLSGSIPPSIGNCPVLLTLDVSNNSLTGAIPPSLANSTRLYRLNLSFNSLMGSIPVSL TQSPSLIVLALQHNYLSGSIPDTWGRKGNYSYHLQFLILDHNLISGTIPVSLNKLALLQEISLSHNKLSGAIPNEMGSLSRLQKLDFSNNAFNGSIPSSL SNLTSLASLNLEGNRLDNQIPDGFDRLHNLSVLNLKNNQFIGPIPASIGNISSVNQLDLAQNNFSGEIPASLVRLATLTYFNVSYNNLSGSVPSSLAKKF NSSSFVGNLQLCGYSFSTPCLSPPPIVLPTPTKEEPKRHRRKFSTKDIILIAAGVLLAVLLLLCFILLCCLMKKRSASKGKHGKTTMRGLPGESEKTGAV AGPEVESGGEMGGKLVHFDGQFVFTADDLLCATAEIMGKSSYGTAYKATLEDGSQVAVKRLREKTTKGQMEFETEAAALGKIRHPNLLALRAYYLGPKGE KLLVFDYMPIGSLASYLHARGPEIAVDWPTRMNIAIGVARGLNHLHTQQEIIHGNLTSSNILLDEQTNAHIADFGLSRLMTTTANTTVISTVGTLGYRAP ELSKLKNANTKTDVYSLGVIILELLTGKSPGEPMNGMDLPQWVASIVKEEWTNEIFDLELVRDSQAIGDELLNTLKLALHCVDPTPTARPEAEEVVQQLE EIKPELAAAPADDGAKVPTTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51740		IMK2	inflorescence meristem recepto...		Potri.006G104300 [exp]	0	1	Pt-RHG1.3
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.006G035200 [exp]	5.56	0.9604
AT1G67820			Protein phosphatase 2C family ...		Potri.010G047600 [exp]	6.00	0.9428
AT4G15830			ARM repeat superfamily protein...		Potri.008G221700 [exp]	6.78	0.9514
AT2G42110			unknown protein		Potri.006G192500 [exp]	8.94	0.9490
AT5G53250		AGP22, ATAGP22	arabinogalactan protein 22 (.1...		Potri.003G136600 [exp]	9.27	0.8944
AT1G11125			unknown protein		Potri.011G045700 [exp]	9.32	0.8940
AT4G20430			Subtilase family protein (.1.2...		Potri.001G440300 [exp]	10.09	0.9146
AT4G28430			Reticulon family protein (.1)		Potri.017G014300 [exp]	10.81	0.9500
AT5G12930			unknown protein		Potri.001G017100 [exp]	10.95	0.9499
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.013G053200 [exp]	12.72	0.9455	Pt-SYP111.1

Compare expression of checked genes

Potri.006G104300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.