Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38360 206 / 3e-67 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT5G01640 174 / 1e-54 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT3G56110 172 / 6e-54 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT5G05380 164 / 1e-50 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT2G40380 159 / 7e-49 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT5G07110 143 / 1e-42 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT4G00005 74 / 1e-16 PRA1 (Prenylated rab acceptor) family protein (.1) AT1G55190 74 / 4e-16 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G08770 70 / 2e-14 PRA1.E prenylated RAB acceptor 1.E (.1) AT1G04260 69 / 2e-14 PRA1.D, MPIP7, MPI7 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126400 [exp] 275 / 4e-94 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.008G074000 [exp] 188 / 2e-60 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.008G074033 [exp] 188 / 2e-60 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.010G183300 [exp] 184 / 9e-59 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.019G124100 [exp] 159 / 7e-49 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.005G219100 [exp] 98 / 2e-25 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 97 / 4e-25 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 89 / 9e-22 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.002G043800 [exp] 84 / 8e-20 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012224 [exp] 206 / 6e-67 AT2G38360 310 / 3e-108 prenylated RAB acceptor 1.B4 (.1) Lus10002853 [exp] 199 / 7e-64 AT2G38360 305 / 4e-106 prenylated RAB acceptor 1.B4 (.1) Lus10042246 [exp] 181 / 7e-57 AT2G38360 250 / 4e-84 prenylated RAB acceptor 1.B4 (.1) Lus10026404 [exp] 177 / 1e-55 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1) Lus10017425 [exp] 166 / 3e-51 AT2G38360 281 / 9e-97 prenylated RAB acceptor 1.B4 (.1) Lus10007533 [exp] 164 / 6e-51 AT2G38360 281 / 6e-97 prenylated RAB acceptor 1.B4 (.1) Lus10009842 [exp] 162 / 4e-50 AT2G38360 278 / 1e-95 prenylated RAB acceptor 1.B4 (.1) Lus10022680 [exp] 147 / 1e-44 AT2G38360 232 / 1e-78 prenylated RAB acceptor 1.B4 (.1) Lus10014234 [exp] 99 / 4e-26 AT2G38360 164 / 1e-51 prenylated RAB acceptor 1.B4 (.1) Lus10014747 [exp] 84 / 2e-19 AT1G55190 147 / 9e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [poplar] [flax] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Potri.006G104400.1 pacid=42770229 polypeptide=Potri.006G104400.1.p locus=Potri.006G104400 ID=Potri.006G104400.1.v4.1 annot-version=v4.1 ATGTCATCCCAGTCTCCGCCAGTCCTCCCGATCACAAACCAGCAACAACCACCCGCCGCTGCCGCCTCCCAACCACCTCTCCCTCCACACGCCCTCCGCG CATTCCTCAACAACATTACCGAATCCGTCCGCAACGGTTTCGCCCAACGCCGCCCCTTTTCCGAACTAATCGACCGATCCGCTTTCTCTAAACCTGAATC CATATCCGAAGCCACAACTCGCATCCGTAAAAACTACTCCTACTTCCGCATCAACTATCTTACCGCTATTTCCGTAATCCTCGCATTTTCCCTCCTTTCT CACCCTTTCTCTCTCCTCCTCCTCCTCGGCCTGCTCTGTTCTTGGCTTTTCTTGTATCTCTTCCGCGCTTCGGATCAGCCTTTGGTCCTCTTCGGCCGGA CTTATAGTGACCGTGAAACGCTCGGGATTCTGATTGCATTGAGTGTTTTCGTGGTTTTTCTAACTAGTGTCGGATCTGTGATAATATCGGCGCTTTTGGT CGGTGTTGGGATCGTTTGTGCTCATGGTGCTTTTCGTGTTCCTGAGGATCTTTTCTTGGACGACGTTCCAGAAAATGCAAACACTGGCTTCTTGTCTTCC TTCCTCGGCAGCGCTGCCTCCAATGTTGTTTCCTCTGCGGCGCCTCTTGTGGCAGCCGCCCGTGTTTGA
AA sequence Show only first row Show all	>Potri.006G104400.1 pacid=42770229 polypeptide=Potri.006G104400.1.p locus=Potri.006G104400 ID=Potri.006G104400.1.v4.1 annot-version=v4.1 MSSQSPPVLPITNQQQPPAAAASQPPLPPHALRAFLNNITESVRNGFAQRRPFSELIDRSAFSKPESISEATTRIRKNYSYFRINYLTAISVILAFSLLS HPFSLLLLLGLLCSWLFLYLFRASDQPLVLFGRTYSDRETLGILIALSVFVVFLTSVGSVIISALLVGVGIVCAHGAFRVPEDLFLDDVPENANTGFLSS FLGSAASNVVSSAAPLVAAARV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Potri.006G104400 [exp]	0	1
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	3.60	0.9339
AT2G18840			Integral membrane Yip1 family ...		Potri.018G093800 [exp]	5.19	0.9145
AT5G64090			unknown protein		Potri.003G020500 [exp]	5.83	0.8949
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087500 [exp]	8.00	0.9294	LAC110c
AT4G30260			Integral membrane Yip1 family ...		Potri.006G169200 [exp]	8.77	0.9087
					Potri.009G092300 [exp]	9.38	0.9271	AGP9.1
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.001G142100 [exp]	12.36	0.9284	UBP20.2
AT5G54430		ATPHOS32	Adenine nucleotide alpha hydro...		Potri.011G125500 [exp]	13.85	0.8814
AT1G68725		AGP19, ATAGP19	arabinogalactan protein 19 (.1...		Potri.010G132500 [exp]	14.45	0.9047
AT4G01400			unknown protein		Potri.002G179600 [exp]	15.87	0.9086

Compare expression of checked genes

Potri.006G104400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.