Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60250 424 / 3e-141 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G25370 308 / 4e-97 RING/U-box superfamily protein (.1.2) AT3G45580 290 / 2e-92 RING/U-box protein with C6HC-type zinc finger (.1) AT5G37560 288 / 3e-91 RING/U-box superfamily protein (.1) AT2G25360 276 / 1e-87 RING/U-box superfamily protein (.1) AT2G21420 268 / 2e-83 IBR domain containing protein (.1) AT3G43750 262 / 1e-82 RING/U-box protein with C6HC-type zinc finger domain (.1) AT2G26130 250 / 3e-77 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45460 241 / 6e-74 IBR domain containing protein (.1) AT2G26135 240 / 8e-74 RING/U-box protein with C6HC-type zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G150100 [exp] 538 / 0 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G119000 [exp] 180 / 8e-50 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.015G117600 [exp] 170 / 4e-46 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.003G187700 [exp] 148 / 6e-40 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.001G037200 [exp] 142 / 6e-38 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 137 / 4e-35 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 102 / 2e-24 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.006G123500 [exp] 98 / 9e-23 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 95 / 1e-21 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036128 [exp] 551 / 0 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036127 [exp] 461 / 3e-156 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10038341 [exp] 186 / 9e-52 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 176 / 6e-48 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10026104 [exp] 141 / 4e-37 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10024093 [exp] 139 / 5e-37 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10000412 [exp] 139 / 3e-36 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10022063 [exp] 110 / 7e-27 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1) Lus10018293 [exp] 79 / 3e-15 AT4G19670 285 / 9e-91 RING/U-box superfamily protein (.1.2) Lus10013371 [exp] 75 / 6e-14 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain CL0219 [poplar] [flax] RNase_H PF13456 [poplar] [flax] RVT_3 Reverse transcriptase-like
Representative CDS sequence Show only first row Show all	>Potri.006G104700.3 pacid=42770660 polypeptide=Potri.006G104700.3.p locus=Potri.006G104700 ID=Potri.006G104700.3.v4.1 annot-version=v4.1 ATGAGCACGTTTACCAACAGAGACTTCGACGACGACTACGACTACGACTACGATGACTTCGACGACGAGGACCTTCTCTCCCTCCTTTCCGAACAGCGGC GAGAACTAATGGCTGCCGAATCCCTAGAAACCGACCTCGACTTTGCCTTCCGACTTCAACTCCAAGAAGCCATAAACGCCTCCATACCTCTCCTCCCTTC CACGTCCGCCTCCACGTCTGCCTCCACATCCGCCTCCACGTCGGCCTCCGCCTCTACCTCAACTGCGTCGCCTCCGATTGGCAAAGTCGAAATTACTGCA CCTCTGTCCACTCTACAATTTGAAGAAATCTCAAAATTAGAGCAAAAGCTAAAAGATCGCAGACAATCAGAACTCGAATCGCGCAGGATCAGAAAAGATC TCGACCGTCGAATCCATGACCAGAAAGTAGCTCGAGAGATTCTGGAAATACCAGAGGAAGAGTGGCTAGACTGGGGAGATGATTTCGTAAAAGAAGAAGA AGATGATGATGATTCTGAATCAGTAGTATTCAAGCTGTATGTTAAGGGTTTGGTTAGTGAAGAAAAAGGGAATAAAGTTTTCGGTGGAATTGGAATTGCG ATTTGTGACCCGATGAATAATTTGGTTTTTGAAATAAGCAAGCCACTGATAGGGAATGGAAGGAGCAAGAATGCGGCCGAAGCTAAGGCTTTGATCGAAG GCCTTAATGCTGCTCTTGCTTTGGACCTTAAGAGAATTGCTGTGTATTGCCACTGTTGTCCGCTTTATAATTTTGTTACTGGGAGATGGTCTGCGAAGCA GAGGAAGGTTGCTGTGTTAATCAATCAGGTAGCTCTTCTTCGAAGGAAGTTTGTCTATTGTAATCCTGTTCTTGTGCCACGGAATGATATTGAATATGCA TTTAGATTTGCTAGAGAGGCTATAATTTCTCAGGTCACGATGCAGCCAGCAGAATCCACCCACAAGAGGGTTGCCATTATTGAGGCTTGTGTTATTTGTC TTGAAGATACTGATGTTGAACATATCTTTTCGGTTGATGAATGCCAGCATAGGTACTGTTTTTCTTGTATGAAACAGCATGTGGAGGTTAAATTGCTCCA TGGAATGATGCCGAAATGCCCTCATGAAGGATGTGACTCTTTGCTTAACGTTGAAAGTTGTAGGAAATTCTTGACACCTAAATTAATTGAGATGATGTGC CTACGTATAAAGGAAGCTTCGATCCCAGTTTCGGAGAAAATCTACTGCCCGTATCCTAAATGCTCTGCATTGATGTCGAAAACTGACGTTTTGGAATATG CTAAAAGTGCAGTTGCTGCTGGTTTGCAATGTGTTGGTGCAAGGAAATGTTCGAAATGCCATGGTCTTTTTTGTATTAATTGCAAGGTCCCATGGCATAA TAACATGACATGTTCTAGTTACAAAAGAATGAATCCTAACAACCCTGCAGAAGATTTCAAACTGAAATCTCTTGCAACAAGGAACCTATGGCGCCAATGT GTGAAGTGCAACCATATGATTGAACTTGCTGAAGGTTGTTACCACATGACTTGCAGATGTGGCTTCGAGTTTTGCTATAATTGTGGAGCTGAGTGGAAGG ACAAGAAAGCAACATGCTCTTGTCCACTCTGGGATGAGGATAATATCTTGTATGCTGAAAATGATTCAGACGTTGATGAAGATGATTTTGATGAGGATGA GGATGAGGATGATTACTATGACTCCGAATCCGACGGTTATTTTATTTAG
AA sequence Show only first row Show all	>Potri.006G104700.3 pacid=42770660 polypeptide=Potri.006G104700.3.p locus=Potri.006G104700 ID=Potri.006G104700.3.v4.1 annot-version=v4.1 MSTFTNRDFDDDYDYDYDDFDDEDLLSLLSEQRRELMAAESLETDLDFAFRLQLQEAINASIPLLPSTSASTSASTSASTSASASTSTASPPIGKVEITA PLSTLQFEEISKLEQKLKDRRQSELESRRIRKDLDRRIHDQKVAREILEIPEEEWLDWGDDFVKEEEDDDDSESVVFKLYVKGLVSEEKGNKVFGGIGIA ICDPMNNLVFEISKPLIGNGRSKNAAEAKALIEGLNAALALDLKRIAVYCHCCPLYNFVTGRWSAKQRKVAVLINQVALLRRKFVYCNPVLVPRNDIEYA FRFAREAIISQVTMQPAESTHKRVAIIEACVICLEDTDVEHIFSVDECQHRYCFSCMKQHVEVKLLHGMMPKCPHEGCDSLLNVESCRKFLTPKLIEMMC LRIKEASIPVSEKIYCPYPKCSALMSKTDVLEYAKSAVAAGLQCVGARKCSKCHGLFCINCKVPWHNNMTCSSYKRMNPNNPAEDFKLKSLATRNLWRQC VKCNHMIELAEGCYHMTCRCGFEFCYNCGAEWKDKKATCSCPLWDEDNILYAENDSDVDEDDFDEDEDEDDYYDSESDGYFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.006G104700 [exp]	0	1
AT3G47940			DNAJ heat shock family protein...		Potri.015G066100 [exp]	3.74	0.8909
AT3G22980			Ribosomal protein S5/Elongatio...		Potri.009G152500 [exp]	6.32	0.8671
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.002G116400 [exp]	8.83	0.8318
AT2G19270			unknown protein		Potri.006G075000 [exp]	9.64	0.8840
AT2G44200			CBF1-interacting co-repressor ...		Potri.006G000200 [exp]	9.74	0.8797
AT5G64090			unknown protein		Potri.001G209800 [exp]	11.35	0.8291
AT1G03140			splicing factor Prp18 family p...		Potri.005G210600 [exp]	12.00	0.8499
AT1G10580			Transducin/WD40 repeat-like su...		Potri.008G172800 [exp]	12.16	0.8803
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.016G131900 [exp]	13.41	0.8763
					Potri.001G078409 [exp]	14.42	0.8495

Compare expression of checked genes

Potri.006G104700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.