Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01700 369 / 7e-125 Protein phosphatase 2C family protein (.1.2) AT1G16220 355 / 6e-118 Protein phosphatase 2C family protein (.1) AT5G36250 352 / 2e-117 Protein phosphatase 2C family protein (.1) AT1G03590 350 / 1e-116 Protein phosphatase 2C family protein (.1) AT3G02750 342 / 4e-113 Protein phosphatase 2C family protein (.1.2.3) AT1G79630 340 / 3e-112 Protein phosphatase 2C family protein (.1.2.3) AT4G03415 336 / 5e-111 Protein phosphatase 2C family protein (.1.2) AT5G27930 288 / 2e-93 Protein phosphatase 2C family protein (.1.2) AT3G05640 283 / 9e-92 Protein phosphatase 2C family protein (.1.2) AT3G16800 279 / 2e-90 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G127900 [exp] 773 / 0 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 361 / 2e-120 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G144100 [exp] 354 / 5e-118 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G085500 [exp] 350 / 2e-116 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G103100 [exp] 350 / 2e-116 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G473300 [exp] 347 / 2e-114 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.004G066200 [exp] 343 / 2e-113 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.018G059800 [exp] 318 / 1e-105 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.010G006200 [exp] 302 / 4e-99 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022683 [exp] 558 / 0 AT3G02750 352 / 9e-119 Protein phosphatase 2C family protein (.1.2.3) Lus10001268 [exp] 551 / 0 AT5G01700 365 / 8e-124 Protein phosphatase 2C family protein (.1.2) Lus10014231 [exp] 543 / 0 AT5G01700 360 / 1e-120 Protein phosphatase 2C family protein (.1.2) Lus10012218 [exp] 536 / 0 AT5G36250 353 / 3e-118 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 351 / 1e-116 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10000402 [exp] 351 / 3e-116 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10018570 [exp] 350 / 4e-116 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027122 [exp] 346 / 3e-114 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10033708 [exp] 332 / 3e-109 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10022588 [exp] 328 / 9e-109 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.006G105000.1 pacid=42768967 polypeptide=Potri.006G105000.1.p locus=Potri.006G105000 ID=Potri.006G105000.1.v4.1 annot-version=v4.1 ATGGGAGCTTGTTGCAGTAGGGAACCATATGGTAATGGGGTGGATGTAGAGGATGCTGTTGCAGACAGAGAACAAGAGGATGGTGAGGAAGGTGATGCAA TTATTGGAGATTATGGGGCCCGTGTGAGGTTATATGGAGCTTCAAAATATACATCAATGTACACCCAACAAGGAAGAAAAGTGACCAATCAAGATGCTAT GACTGTTTGGGAGGAATTTACTGGTGATAAGGATATGCTTTTCTGTGGAGTTTTTGATGGTCATGGCCCCTATGGTCACAAAGTTGCGCGCCATGTACGT GATACTTTACCCTCGAGGCTCTCTAGTGCAATCAAAGCATCACAGAATAATAGCTTCAAACGTAGAGATAACGAAGGAAAAGGAGATAATAGCGACGAGG TCAGTAAAAATCAAGGTGACGAAGATAGTGGCGACTATGATGATAGCAGTAGTCTGCTGTTATCTTCATGGGAGACCAGCTTCATTAAATCTTTCAAGGA AATGGATGAAGAACTTAGCCTTGATGCCAGCATTGACAGCTTTTGCAGTGGAACTACTGCTGTGTCTGTAATTAAGGAGGGAAACAACTTGATAATTGCC AACTTGGGCGATTCTCGTGCTATTCTTTGTTCTAGGGGCCCCAAAAACCAACTTGTTCCCGTCCAACTCACTGTTGATCTAAAACCAAATATTTCAAGTG AAGCTGAAAGAATCAAGAACTCCAATGGCAGAGTTCTTGCATTGGATCAAGAACCAGAAGTTTTCAGAGTATGGATGCCTGATGAAGATTGTCCTGGTCT CGCCATGGCAAGGGCTTTTGGAGATTTCTGCCTGAAAGATTACGGCCTCATTTCAACTCCTGAGGTTTCTTATAGAAGGCTAACCGATAAGGATGAATTT GTGGTTCTAGCAACTGATGGGGTATGGGATGTGTTAACAAACTATGAGGTCGTAAAGATTGTTGCTTATGCAAGGAAGCGATCCATGGCTGCTAAATTGG TAGTAAAGTATGCTGTTCGTGCATGGAAAATTAAATATCCCGGATGCAAGGTCGATGACTGTGCAGTTATATGCTTGTTTCTGAAGAATCGAACTTTGTT AGCCAGATCCTTTTCTGAACTGACCCAAGTCAGTGTGAATCACTCAGAGCTTGAAGCCTGCTCTGATGTGAGCTTGGCCAAGCTTGAAAACTACTCTGAA GTGAGCCGGGCCAGTCTCAATCACTCAGAGATTGCAGCAGTTCCAAGAAAGTTCAGATCCAAGAAAAGAGGGGAAATCTCCGAAAATGCCAAGATTTATC TAAACTCGGACGAGAATGACTGTCCTCCTGCCAGATTAGACAAAGTAAATTCATCCGGTAAGTTCCCTCGTTTGCGCAATGTTTTGAGTCGGCGAAAATC AACCAAAGATCATGAAGCTGTTGAAGCCTGGTAA
AA sequence Show only first row Show all	>Potri.006G105000.1 pacid=42768967 polypeptide=Potri.006G105000.1.p locus=Potri.006G105000 ID=Potri.006G105000.1.v4.1 annot-version=v4.1 MGACCSREPYGNGVDVEDAVADREQEDGEEGDAIIGDYGARVRLYGASKYTSMYTQQGRKVTNQDAMTVWEEFTGDKDMLFCGVFDGHGPYGHKVARHVR DTLPSRLSSAIKASQNNSFKRRDNEGKGDNSDEVSKNQGDEDSGDYDDSSSLLLSSWETSFIKSFKEMDEELSLDASIDSFCSGTTAVSVIKEGNNLIIA NLGDSRAILCSRGPKNQLVPVQLTVDLKPNISSEAERIKNSNGRVLALDQEPEVFRVWMPDEDCPGLAMARAFGDFCLKDYGLISTPEVSYRRLTDKDEF VVLATDGVWDVLTNYEVVKIVAYARKRSMAAKLVVKYAVRAWKIKYPGCKVDDCAVICLFLKNRTLLARSFSELTQVSVNHSELEACSDVSLAKLENYSE VSRASLNHSEIAAVPRKFRSKKRGEISENAKIYLNSDENDCPPARLDKVNSSGKFPRLRNVLSRRKSTKDHEAVEAW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01700			Protein phosphatase 2C family ...		Potri.006G105000 [exp]	0	1
					Potri.011G070800 [exp]	5.00	0.8841
AT4G39630			unknown protein		Potri.005G082500 [exp]	7.34	0.8698
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.004G157800 [exp]	10.39	0.8800
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.014G156000 [exp]	16.79	0.8439
AT3G17380			TRAF-like family protein (.1)		Potri.017G049100 [exp]	22.47	0.8526
AT2G24800			Peroxidase superfamily protein...		Potri.018G015500 [exp]	30.82	0.8288
AT5G12920			Transducin/WD40 repeat-like su...		Potri.001G016800 [exp]	32.49	0.8362
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.011G005200 [exp]	32.84	0.8346
AT1G25375			Metallo-hydrolase/oxidoreducta...		Potri.010G122000 [exp]	34.98	0.8039
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.006G154700 [exp]	39.20	0.8123

Compare expression of checked genes

Potri.006G105000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.