Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38470 340 / 8e-111 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT5G07100 251 / 2e-79 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT4G26640 254 / 2e-77 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G03340 252 / 5e-77 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT5G56270 249 / 3e-74 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT1G13960 245 / 3e-74 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G30250 238 / 4e-73 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT4G26440 229 / 6e-68 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT3G01080 216 / 1e-64 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT2G04880 203 / 5e-59 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128300 [exp] 765 / 0 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 452 / 1e-153 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.019G123500 [exp] 432 / 9e-146 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.011G169300 [exp] 277 / 2e-84 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G472800 [exp] 275 / 1e-83 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G361600 [exp] 270 / 2e-83 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.010G163000 [exp] 259 / 5e-80 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 258 / 9e-80 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.011G087900 [exp] 258 / 6e-79 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001265 [exp] 462 / 1e-158 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10012215 [exp] 453 / 1e-154 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10042243 [exp] 346 / 1e-113 AT5G07100 323 / 5e-105 WRKY DNA-binding protein 26 (.1.2) Lus10032887 [exp] 278 / 7e-85 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10043167 [exp] 269 / 3e-83 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10016595 [exp] 268 / 1e-82 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10027139 [exp] 271 / 3e-82 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10032580 [exp] 261 / 7e-82 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10026634 [exp] 260 / 4e-81 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10030424 [exp] 260 / 8e-81 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G105300.1 pacid=42768497 polypeptide=Potri.006G105300.1.p locus=Potri.006G105300 ID=Potri.006G105300.1.v4.1 annot-version=v4.1 ATGGCATCTTCAGCTTCTGCTAGCTCAACTACTACTATAAATTCTCTATCTAACCTCTCTCTCCCAACCCAAATCATGACTTTCTCTTCTCCTTCTTTTA CTGATCTTGTTTCTGGTAATAACAAATATATGGACAACCTAAGCTGGGGACTTTATGAATATGGAACTAATGATAGAAATGGAATTGAAATCCCGAACTT CAAGTCATTTCAACCTCCTTCACTCCCTCTATCTCCTCCCCCAGTTTCTCCTTCTTCTTACTGGGCCATTCCTCCTCGTTTAAGCCCAACTGAGCTCTTG GACTCACCTGTACTTTTCCCTACTTCCTATGCTCTTGCATCTCCAACAAGTGGGTTTTTTGCTGGTCAAACCTTCAACTGGAGAAGTAATTCTAATGACA ATCAGCGAGGTGTTAGCGGAGAAGAGAAAGACTGCAGTGATTTCTCTTTCCAAACCCAAACAAGACCTCCTACAATTTCATCATCATCATCATCCTTGTT TCAATCTTCTTCAAACAGTGTTGTAGTGGAGAAATCACTGAAGAGGAAACATGAAGAATGGAAATTTAACCAGTCGAAGCAAACTGACTTTTCATTAGAT CAGAAAACAGGAGTGAAATCAGTATCTGCACCAGTTCAGAGTTTCTCCTCAGAATTGGTTCCGCTACAAGCAAACATGCAAAACAGCACTGCTCCTCAAC CAAGTTACAACCAATACAATCAAGCAGGTCATTATATGAGGGAGAATGGAAGGTCAGAGGATAGATACAAGTGGAGAAAATATGGACAAAAACAAGTTAA AGGAAGTGAGAATCCGAGGAGTTACTATAAGTGCACATATCCGAATTGCACAACGAAGAAAAAAGTGGAGAGGTCTTTGGATGGACAGATTACTGAAATA GTTTATAAAGGAAGTCACAACCATTCCAAGCCTCAGTCCACTAGAAGATCATCCTCTCAATCAGTTTATCCTTCTGGAGGTGCCAACTCTGAAATCTCTT ATCAATCAGGAGCACCAATGGAGTCTGGCATGATGCAGGAGGACTCTTCGATTTCACTTGGGGAGGATGATATTGACCATAGCTCACCGATTAGCAATTC TGGAGGAGAGGACAACGAAAACGAACCTGATGCCAAAAGATGGCTGGGACAGAACGAAAATGAGAGTATTTTAGGTGCTGGAAGTAAAACTGTTAGAGAA TCTAGAATTGTGGTTCAAACAACAAGTGACATTGACATACTTGATGACGGCTATAGATGGCGAAAATACGGGCAGAAAGTCGTCAGGGGAAATCCAAATC CAAGGAGCTACTACAAATGTACATCTGCTGGTTGTCCTGTGAGAAAACATGTAGAGCGAGCATCGCATGATTTGAGATCTGTGATTACAACTTACGAAGG AAAACACAACCATGATGTTCCAGCTGCCCGGGGCAGGGGCAATGTGAACAAAGCTCCATCCAATGCTAACAGCACTGCCAATGCTCCGATCCCTATAAGG CCTTCTGTCATGGCCAGTCATTCTAACCAGACACGTTATCATCCAAACTCCCTTCACAGCACAAGATTATTGCCAACATCAGGGAGTCAAGCACCATTTA CCCTCCAAATGTTACAGAGTCAAGGGAGTTTTGAATACTGA
AA sequence Show only first row Show all	>Potri.006G105300.1 pacid=42768497 polypeptide=Potri.006G105300.1.p locus=Potri.006G105300 ID=Potri.006G105300.1.v4.1 annot-version=v4.1 MASSASASSTTTINSLSNLSLPTQIMTFSSPSFTDLVSGNNKYMDNLSWGLYEYGTNDRNGIEIPNFKSFQPPSLPLSPPPVSPSSYWAIPPRLSPTELL DSPVLFPTSYALASPTSGFFAGQTFNWRSNSNDNQRGVSGEEKDCSDFSFQTQTRPPTISSSSSSLFQSSSNSVVVEKSLKRKHEEWKFNQSKQTDFSLD QKTGVKSVSAPVQSFSSELVPLQANMQNSTAPQPSYNQYNQAGHYMRENGRSEDRYKWRKYGQKQVKGSENPRSYYKCTYPNCTTKKKVERSLDGQITEI VYKGSHNHSKPQSTRRSSSQSVYPSGGANSEISYQSGAPMESGMMQEDSSISLGEDDIDHSSPISNSGGEDNENEPDAKRWLGQNENESILGAGSKTVRE SRIVVQTTSDIDILDDGYRWRKYGQKVVRGNPNPRSYYKCTSAGCPVRKHVERASHDLRSVITTYEGKHNHDVPAARGRGNVNKAPSNANSTANAPIPIR PSVMASHSNQTRYHPNSLHSTRLLPTSGSQAPFTLQMLQSQGSFEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.006G105300 [exp]	0	1
AT2G15730			P-loop containing nucleoside t...		Potri.014G034300 [exp]	1.00	0.9712
AT1G16670			Protein kinase superfamily pro...		Potri.001G438400 [exp]	1.73	0.9439
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.008G082100 [exp]	2.00	0.9330
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.015G055000 [exp]	2.44	0.9283
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025566 [exp]	3.87	0.9321
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385400 [exp]	4.58	0.9192
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.014G022500 [exp]	4.89	0.9071	MYB173
AT1G06800		PLA-I{gamma}1	phospholipase A I gamma 1, alp...		Potri.005G218500 [exp]	4.89	0.8946
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.004G148300 [exp]	7.41	0.9011
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.004G206100 [exp]	8.48	0.9046

Compare expression of checked genes

Potri.006G105300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.