Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08820 811 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 579 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 549 / 0 MEF22 mitochondrial editing factor 22 (.1) AT2G29760 545 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 518 / 1e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 512 / 5e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 505 / 5e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 506 / 1e-170 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 505 / 1e-168 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 503 / 1e-168 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128900 [exp] 1219 / 0 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 597 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 591 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 575 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 574 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G220300 [exp] 568 / 0 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 547 / 0 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 539 / 0 AT3G22690 582 / 0.0 unknown protein Potri.013G152000 [exp] 537 / 0 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029436 [exp] 1024 / 0 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 580 / 0 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 565 / 0 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 560 / 0 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 548 / 0 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 523 / 7e-178 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 525 / 9e-177 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029793 [exp] 517 / 6e-176 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 516 / 2e-175 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 520 / 2e-174 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.006G105700.1 pacid=42769935 polypeptide=Potri.006G105700.1.p locus=Potri.006G105700 ID=Potri.006G105700.1.v4.1 annot-version=v4.1 ATGTCTTCCTTAATTCTCAACAAGTCAGCACACATCAAAATCCGCCTCTTTCAAGGCTTTAACTCTCTCAAACACCTAAAACATGTCCACGCAGCCCTTC TCCGCCTCGGCCTCGACGAAGACAGTTACCTCCTTAACAAGGTCTTACGTTTCAGCTTCAACTTTGGCAACACAAACTATTCCCATCGCATATTTCATCA AACCAAAGAACCTAATATTTTCCTTTTCAATACAATGATCCATGGCTTAGTTTTGAATGATTCTTTCCAAGAATCCATTGAAATTTACCACTCAATGAGA AAAGAAGGGCTTTCTCCTGATAGTTTTACTTTCCCTTTTTTGTTGAAAGCGTGTGCCAGGCTTTTGGATTCTAAATTGGGTATTAAGTTGCATGGCCTTG TGGTTAAAGCGGGTTGTGAATCGGATGCGTTTGTTAATACTAGTTTGGTCAGTTTGTATGGGAAATGTGGGTTTATAGACAATGCATTTAAGGTGTTTGA TGATATTCCCGAGAAGAATGTTGCTGCGTGGACGGCGATAATAAGTGGGTATATTGGTGTTGGGAAATGTAGGGAGGCGATTGATATGTTTCGTAGGTTG TTGGATATGGGTTTGAGGCCGGATAGTTTCAGTCTTGTTCGGGTTTTGGCTGCCTGCACACGAATTGGGGATTTGAGAAGTGGAGAGTGGATTGATGATT ACATAACGAAGATTGGCATGGTAAGGAATGTGTTTGTGGCTACTTCTTTGGTGGATTTTTATGTCAAATGTGGAAACATGGAGAGAGCATGTAGTGTCTT TGATGGGATGCTGGAGAAGGATATTGTTTCTTGGAGTTCTATGATTCAGGGTTATGCTTCCAATGGGCTGCCTAAAGAAGCTTTAGACCTCTTTTTTAAA ATGTTGAATGAGGGTTTCAGACCTGATTGTTATGCTATGGTGGGGGTTCTTTGTGCTTGTGCGAGGTTAGGAGCACTAGAATTAGGGAACTGGGCTAGCA ATTTGATGGATAGAAATGAGTTCTTGGGCAATCCTGTCTTGGGTACGGCATTGATTGACATGTATGCAAAATGTGGGAGAATGGATAGCGCCTGGGAAGT TTTCAGGGGAATGAGGAAGAAAGATATAGTAGTTTGGAATGCAGCTATATCAGGTCTTGCCATGAGTGGACATGTCAAAGCAGCATTTGGACTTTTTGGC CAAATGGAGAAATCTGGGATTGAGCCGGATGGGAACACTTTTGTTGGCCTACTTTGTGCTTGTACTCATGCGGGTCTAGTTGACGAGGGTCGTCAATATT TTAATAGTATGGAACGTGTTTTTACCTTGACTCCAGAAATCGAACACTATGGATGCATGGTGGATCTCCTGGGCCGTGCAGGTTTCTTAGATGAAGCTCA TCAGCTTGTCAAAAGTATGCCAATGGAGGCCAATGCTATTGTTTGGGGAGCATTGCTGGGTGGATGCAGGCTGCATAGAGATACCCAATTGGTGGAAGGT GTGCTGAAACAGCTCATAGCATTAGAACCGTCCAACTCAGGTAATTACGTTCTTTTGTCAAATATATATTCAGCAAGTCATAAATGGGAAGATGCAGCAA AGATTAGGTCAATCATGAGTGAGAGGGGGATTAAGAAAGTACCAGGGTATAGTTGGATTGAAGTGGATGGAGTTGTTCATGAATTCCTTGTGGGGGATAC ATCCCATCCCTTATCGGAGAAAATATATGCAAAACTTGGCGAATTGGTCAAGGACTTGAAAGCATCAGGTTATGTTCCCACAACAGATTATGTGCTGTTT GATATAGAAGAAGAGGAGAAGGAGCATTTCATTGGTTGTCACAGTGAGAAGCTGGCTATTGCCTTTGGTTTGATAAGCACAGCTCCAAATGACAAAATTC GTGTTGTGAAAAATCTTCGTGTTTGTGGTGATTGTCATGAGGCAATAAAGCACATTTCTAGGTTTACAGGTAGAGAGATAATTGTGAGAGATAACAACCG ATTCCATTGTTTTAATGATGGTTCTTGTTCATGTAAAGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.006G105700.1 pacid=42769935 polypeptide=Potri.006G105700.1.p locus=Potri.006G105700 ID=Potri.006G105700.1.v4.1 annot-version=v4.1 MSSLILNKSAHIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMR KEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRL LDMGLRPDSFSLVRVLAACTRIGDLRSGEWIDDYITKIGMVRNVFVATSLVDFYVKCGNMERACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFK MLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFG QMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEG VLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLF DIEEEEKEHFIGCHSEKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	0	1
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	1.00	0.9341
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	2.82	0.9145
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G132500 [exp]	4.79	0.8810
AT5G04780			Pentatricopeptide repeat (PPR)...		Potri.010G241100 [exp]	5.29	0.9013
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.004G043400 [exp]	6.92	0.9117
AT5G39350			Tetratricopeptide repeat (TPR)...		Potri.004G124400 [exp]	7.07	0.9053
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.009G067000 [exp]	7.48	0.9003
AT1G09220			Pentatricopeptide repeat (PPR)...		Potri.013G054400 [exp]	7.74	0.8705
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	8.24	0.9105
AT3G14580			Pentatricopeptide repeat (PPR)...		Potri.001G379500 [exp]	8.60	0.8346

Compare expression of checked genes

Potri.006G105700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.