Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	WAVE4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38440 427 / 2e-126 ITB1, DIS3, SCAR2, WAVE4, ATSCAR2 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) AT5G01730 326 / 2e-92 ATSCAR4, WAVE3 SCAR family protein 4 (.1) AT2G34150 207 / 7e-55 ATSCAR1, WAVE1, ATRANGAP2 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2) AT1G29170 206 / 4e-54 ATSCAR3, WAVE2 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) AT4G18600 190 / 3e-48 SCARL, ATSCAR-LIKE, WAVE5 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 5, SCAR family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G129000 [exp] 1174 / 0 AT2G38440 444 / 2e-130 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Potri.004G057100 [exp] 222 / 1e-58 AT1G29170 447 / 3e-139 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Potri.011G066100 [exp] 205 / 2e-53 AT1G29170 485 / 7e-154 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022757 [exp] 716 / 0 AT2G38440 431 / 1e-127 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Lus10029437 [exp] 692 / 0 AT5G01730 410 / 6e-119 SCAR family protein 4 (.1) Lus10001897 [exp] 230 / 4e-61 AT1G29170 305 / 1e-88 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Lus10013904 [exp] 228 / 2e-60 AT2G34150 300 / 6e-87 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G105800.2 pacid=42767800 polypeptide=Potri.006G105800.2.p locus=Potri.006G105800 ID=Potri.006G105800.2.v4.1 annot-version=v4.1 ATGCCGTTGACGAGATATCAGATAAGGAACGAATACCGTTTAGCCGATCCAGAGTTGTTTAAAGCAGCTGATAAAGATGATCCAGAAGCGCTTTTGGAAG GTGTCGCCATGGCTGGCCTCGTCGGCGTCTTGCGCCAGCTCGGTGACCTCGCCGAGTTCGCTGCTGAGATTTTCCATGACCTGCATGAGGAAGTAATGAC AACTGCAGCAAGAGGCCATGGGCTGATGGCTCGTGTACAACAGCTCGAGGCAGAATTTCCTTCAATTGAGAAGGCATTTCTCTCCCAAACTAATCATTCA CCATTCTTTTCCAGCTCAGGTGCTGACTGGCATCCTAATTTACAAATGGAGCAGAATCTAATTACTCGTGGAGGCTTACCTCACTTTGTAATGGACTCTT ATGAAGAATGCCGTGGCCCACCACAGTTATTCCTTTTGGATAAGTTTGATGTTGCGGGGGCTGGGGCATGTTTGAAACGTTATACCGATCCATCATTCTT TAAAGTTGAAGCAGCATCCTCTGGAATAGCAACTGTAGAAGTTCAGAGGGGGAAGAAAATTCGAAAGAAGAAGAAAGGATCACGGTATAAAAATGGAGAA ACTCCTGAAGTTGTACCAACATCACATGCCAAATTGCATGAGTTGTTTTTGGAGGAGCGTTCTGAAAATGGCCATTCTGACCCTGCACGGCTAGTGAAAT TAAAGAGAAGGCTGTTCAACGGATCTCCATTTGATCTGAAACCTGGGAAGAGTTACATGCAGAAATTTGTGCTTACTCCTTCACCAGATCGTAAACAAGT TTGTGAAGATTCTGTCACTCGTTCACCTTTGAAGTTGACATTAGATAATTCTAGTGAATCAAGGTATGAAATACATGAGGTCAGTGTGGCAAGCCCTGTG AAGCAATCATCACATGGAGGGGAAAGCACATCTTCATCACCCAGTGAACGGGAGGCCACGCTTAAAACTTTTATGGACGAGTTGAATGGAGAGCCTGTTG ATAGTAGAATAATTAAGGTACTTAACCCAATTGTTGATCGTGAGATGGATGAATATCCCCTTATTGTCCAAAAGATGGTGATTGAAGAGGAATCATCAGT TGATGCAGATGGAAAAGCAGAGGGCACTGTAGATGGGGATCATTCTGATGACATGACAAGCGAGGTGGAAAACTACATGGATGCTCTTACTACCATGGAT TCTGGAATGGAAACAGACAATGAGTATAAACCTATGAATGGTCAGGACTTCATGGATGTGAGGGCACACGGTGCAGATTCTGATGCGAACGAGGAACAGC TGGATGCTCAAGCTAATTTTTCAGATTCTCAATCCATTGGAAACTCTTCTCTGTCAGAGGGTGGGAACAGTTCGTTTAAGAAAGGAACGTCTAGCTTTTC TTACTCTGACACTCTCAGCAATGTGGCTGAGAATACAGCATCTGATGGTGAAGGAGCAGGTAAATGGTTCCCTTCTATCTCTTCTACTGAAAACTATCCA AGAGACATTGCTGATTTGCCATCAGATAGTCCATCTGTATTTGTGGAGAGTGGCATAACTGAATCCCATCACCTTGTAACATTCAATGATACCGAGGAAG ACAAAATCCCTGATTCTGGTGAAGCTTCTCGTAGTTCATGTCTTACAGATTGGAATCTTGTGTTCCTGCATGCAGCTCCTGTTGCAGGTTCCATGGTAAG CCCCCTGGCAGGACCTGAACTAGATGAGGCATCCTCTGGCAGTATTGAACCTGGCTCTGAATCACCAAACTCCGATAGGAATGGTTTAAACCTGGCTGAT TTCCCTTCGCAACTGGGGCATGATACTTCACTTACAGATTCTTCTAAAACTCATTCTGTTGGTGAGTTGGATCATGAAGATCAAAAAATGTTAACCGATG CTGTTGTGCTTGTGTCAAATGTGTCAGATCTGGCTTTTGAAAAGAAAGGCAGTGATGATTCTGTGAATGGAGTGCTTCAGACAGATTATGCAGCTGAACA TTCAACTATGACACCGGCAGAGGAGCGATTTCCTAAGTCAACTTTGCCTGTAGTCGAGTTGGATTCAGGGGTCCTATCTCTGCCTGATAATTTGGATTTT GTAAAGCCTGACGTTTTAGTTTCTGAAGTTGACGATGCAATTGCAACAAGGGAGACTAGAGCAGAAAATTTAACACTAGTGGTGGATACTTCAGAGACCG AATGCGTTAGCGAGCATCACTTCTCTGATATGACTATTGATGCTTCACAATTGGAACTTGACTCATCTAAATTAGGAGTTCCATGTTCTGAAGTGAATAT AAATCTTGAAGAAATTCCCAACGGTTTTGATGCTGAGGAAAACATTGCATTCACAAAGGTGGATATTACAAGAGGAGATGCTGCTTCATTCGAACATCAG TCATTGAGTTCAGATAAACCAATACTTGAAGATCATGTAAATTTGGATGATGCTGTAACTGAAACTGGTCAAGCAGAAGATATGGCTGTATCTAGTGCTG CTTCAAGTGGTGCGAACAATGAAGATGTCAGCAATGTGATTTGTCCCTCTTCAGAGTTAGTTTGTTCCCCGCCTAGGAATGCTACAGAGCCACTAGAAGC TCTTTCCATCCCTGAGGATCCACATCTGACAAGGTTGGACCTCGATGAGGTAATTTCCGCCAAACCTTTGTCAGAATCACAGGTGCAGATGGAAGTTACT TCTATAGATTGGGATTCTAACCCATATAAACCAGTTTCTGAAGACCATCCAAATCAAGAGGTAAGTGAAGTTCATAACCTGTCTTTGGAACTGAGCAACC AGGAGTCAGAAACAAAAGATAACCATCAGCATCATTATGCGGAGGCTAGCGACAACACTGTTTGTTTGCCTTTGTGTTATCTACCAGAGTCGGGAAATAC TCTAGAACAATCAACTGAGGTGCAAGATGATCAGTTTAGTGCAGAGTCCAGTCATGCAGACAACACAAATACTTTGTTGAGTAGTCAAACTTCATCTACT GGGTACCTTGTAGGAACTGGAATTCCTCTGGAGCACACATTGGAATTGCAATCTGATCAACTAGACAGGGGATGCTTGAAATTAGGTGAAGCAAGTTCTA TATCAACAGATCTTCAGTCTGAAAGTTCCTGTTTGAAAGATCTCTCCAGTCAAGAGCATTTACTGCAATCATTCTGTCAGGAACGTAATGCAACTGTTCT GGAAACAAATCCATTTGATTCTGCTTTTCCTAGCTTTGGTGTACTCCCTGTCCCTGAGGCAAGTCAGGTCTATCCAGAGGCAATGCCACCATTGCCACCT CTACCTCCTATGCAATGGAGGTTAGGGAAAATTCAACCTGCTTCACTAGATGCAGACAGAGATATGATTGATAACAGTGAAGGCACTTTCCCACTGATCC AGCCATTTATGGTTGATCAGCAGGTCCATTTTGATTTCCCATCATTAGATAGAGAGATCGCGCACCCTTCAAACCCATTTCTGTCTCTCCCTGTTGAAGA AAGTCGGATGTTTCCACACTCGACTACAGAGTCAATGGGAAATTCCTTGCTTCCAACTCCACTCTTGTCAGAAACACCAATCATTGACAATGATGCACAC TGTCAACAGGATCACCTCCGATCAGACACAACACAATCTGTGAGCTCATCTTTGGCTTTACCAGAAATGTCCGATGAGAGGCATGAGCATGGTTTCCTTC CATTAGGAGGAGAATCCGCACAATCTAGTTCCAATCCATTCTCACTAGAGCCAAACATAGAACATACGACTGCTGTAAATGATCCCATGCCAACACAGGG CCTGCCAATCCATCCATTTAATCAATCAGCACCCAAAACAGGATTAGACATGAAGTTTCCTGGACAGAGTTCACAAAGTTCAGAAGAGGAACTAGGGAAT TCTTATGGTAAATCTGCAGCGCCACTAACTATGGAAGAAGAGCCGCATCATGATTTTGTAACTTCACAGGGATTAACAATGTGGCCGCCGACTGCATTAG CTATGACACCACCAACCTCTGAAGTTGGAAAGCCAAATGGAAACAAGATCCCTCGTCCTAGAAATCCTCTCATTGATGCTGTTGCTGCACATGATAAAAG CAAGTTGAGAAAGGTTGCTGAACTAGTTCGACCTCAGGTTGGACCAAAAGTAGAAGAAAGAGATTCACTTCTGGAACAGATACGAACCAAGTCCTTTAAC TTGAAGCCTGCAACCGTGACAAGGCCTAGCATTCAGGGTATTCAGGGTCCAAAAACCAACTTGAAGGTCGCAGCCATCTTAGAGAAAGCAAATGCAATTC GCCAGGCATTGACTGGAAGCGATGAAGATAACGATTCAGACAGCTGGAGTGATTCTTAG
AA sequence Show only first row Show all	>Potri.006G105800.2 pacid=42767800 polypeptide=Potri.006G105800.2.p locus=Potri.006G105800 ID=Potri.006G105800.2.v4.1 annot-version=v4.1 MPLTRYQIRNEYRLADPELFKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEIFHDLHEEVMTTAARGHGLMARVQQLEAEFPSIEKAFLSQTNHS PFFSSSGADWHPNLQMEQNLITRGGLPHFVMDSYEECRGPPQLFLLDKFDVAGAGACLKRYTDPSFFKVEAASSGIATVEVQRGKKIRKKKKGSRYKNGE TPEVVPTSHAKLHELFLEERSENGHSDPARLVKLKRRLFNGSPFDLKPGKSYMQKFVLTPSPDRKQVCEDSVTRSPLKLTLDNSSESRYEIHEVSVASPV KQSSHGGESTSSSPSEREATLKTFMDELNGEPVDSRIIKVLNPIVDREMDEYPLIVQKMVIEEESSVDADGKAEGTVDGDHSDDMTSEVENYMDALTTMD SGMETDNEYKPMNGQDFMDVRAHGADSDANEEQLDAQANFSDSQSIGNSSLSEGGNSSFKKGTSSFSYSDTLSNVAENTASDGEGAGKWFPSISSTENYP RDIADLPSDSPSVFVESGITESHHLVTFNDTEEDKIPDSGEASRSSCLTDWNLVFLHAAPVAGSMVSPLAGPELDEASSGSIEPGSESPNSDRNGLNLAD FPSQLGHDTSLTDSSKTHSVGELDHEDQKMLTDAVVLVSNVSDLAFEKKGSDDSVNGVLQTDYAAEHSTMTPAEERFPKSTLPVVELDSGVLSLPDNLDF VKPDVLVSEVDDAIATRETRAENLTLVVDTSETECVSEHHFSDMTIDASQLELDSSKLGVPCSEVNINLEEIPNGFDAEENIAFTKVDITRGDAASFEHQ SLSSDKPILEDHVNLDDAVTETGQAEDMAVSSAASSGANNEDVSNVICPSSELVCSPPRNATEPLEALSIPEDPHLTRLDLDEVISAKPLSESQVQMEVT SIDWDSNPYKPVSEDHPNQEVSEVHNLSLELSNQESETKDNHQHHYAEASDNTVCLPLCYLPESGNTLEQSTEVQDDQFSAESSHADNTNTLLSSQTSST GYLVGTGIPLEHTLELQSDQLDRGCLKLGEASSISTDLQSESSCLKDLSSQEHLLQSFCQERNATVLETNPFDSAFPSFGVLPVPEASQVYPEAMPPLPP LPPMQWRLGKIQPASLDADRDMIDNSEGTFPLIQPFMVDQQVHFDFPSLDREIAHPSNPFLSLPVEESRMFPHSTTESMGNSLLPTPLLSETPIIDNDAH CQQDHLRSDTTQSVSSSLALPEMSDERHEHGFLPLGGESAQSSSNPFSLEPNIEHTTAVNDPMPTQGLPIHPFNQSAPKTGLDMKFPGQSSQSSEEELGN SYGKSAAPLTMEEEPHHDFVTSQGLTMWPPTALAMTPPTSEVGKPNGNKIPRPRNPLIDAVAAHDKSKLRKVAELVRPQVGPKVEERDSLLEQIRTKSFN LKPATVTRPSIQGIQGPKTNLKVAAILEKANAIRQALTGSDEDNDSDSWSDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.006G105800 [exp]	0	1	WAVE4.1
AT5G43710			Glycosyl hydrolase family 47 p...		Potri.008G160900 [exp]	2.23	0.7833
AT1G31870			unknown protein		Potri.001G147100 [exp]	4.89	0.7868
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.006G000700 [exp]	6.48	0.7423
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.001G398500 [exp]	7.21	0.7445
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.003G214200 [exp]	7.48	0.8038	CALS1.4
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Potri.018G072600 [exp]	11.48	0.7758
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	15.96	0.7869	XIB.1
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.010G245100 [exp]	16.12	0.7233	NTN2.2
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G197500 [exp]	20.32	0.6915
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.013G144600 [exp]	20.63	0.6802

Compare expression of checked genes

Potri.006G105800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.