Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 412 / 4e-146 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 253 / 4e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 251 / 6e-83 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G26760 245 / 3e-80 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 243 / 7e-80 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 245 / 1e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 240 / 7e-79 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 234 / 2e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 225 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 224 / 2e-72 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G129100 [exp] 567 / 0 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 442 / 1e-157 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 286 / 1e-96 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 281 / 7e-95 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 276 / 8e-93 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 275 / 2e-92 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 274 / 7e-92 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 273 / 2e-91 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 270 / 3e-90 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022756 [exp] 423 / 7e-150 AT3G51680 397 / 2e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029438 [exp] 422 / 2e-149 AT3G51680 396 / 3e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 383 / 3e-134 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 276 / 2e-92 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009992 [exp] 269 / 5e-90 AT2G47140 345 / 1e-120 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 270 / 6e-90 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038057 [exp] 265 / 3e-88 AT2G47140 341 / 4e-119 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 264 / 7e-88 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 263 / 1e-87 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 263 / 3e-87 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.006G105900.1 pacid=42767328 polypeptide=Potri.006G105900.1.p locus=Potri.006G105900 ID=Potri.006G105900.1.v4.1 annot-version=v4.1 ATGCCTGGTCAAGTGATGCAAGAGAAAACCCTTCAAAGCATTCATGTCATGGGAAGGGAAAAGTCGACAGAAAACAGCACTCGCTCTCCTGGAAGATTGG AGGGAAGAGTTGCAATAGTCACAGGCGGTGCGCGAGGAATTGGAGAGGCCACTGTAAGACTTTTTGCAAGACAAGGTGCCAAAGTAGTCATTGCTGATGT TGAGGATGCTCTTGGAACTTCGCTCGTAAACTCATTAGCCCCTTCAGTTTCCTTTGTTCATTGTGATGTTAGCTTAGAAAAAGACATTGAGAACCTGATA AACTCCACGATTTCTCAATATGGTAAGTTAGATATTCTTTTCAACAATGCTGGGGTGCTTGGAAATCAATCAAAGAACAAGAGCATTGTTGATTTTGATG TAGACGAATTTGACCGTGTCATGCATGTGAATGTTAGAGGAATGGCACTAGGAATTAAGCACGCAGCACGAGTGATGATTCCTAGAGGAGGTGGGTGTAT TATTTCCACAGCTAGTGTGGCTGGTGTCATGGGAGGGCTTGGTCCTCATGCTTACACAGCTTCAAAGCATGCCATTGTTGGACTCACAAAAAACACAGCT TGTGAGCTTGGCCGGTATGGAATTCGAGTTAATTGCATTTCTCCATTTGGGGTGGCCACATCTATGCTTGTTAATGCCTGGAGAAGTAGTGGCGAAGAGG AAGATTCCTTGAATTTTGGATTGCCTAGTGAAAAGGAAGTGGAGAAGATGGAGGACTTTGTTAGAGGGCTGGCTAACCTAAAAGGTCCAACTCTAAGGGC TAGAGATATAGCTGAAGCTGCTCTTTATCTAGCTAGCGATGAATCAAAGTATGTCAGTGGTCATAATCTTGTTGTGGATGGTGGAATCACAACTTCAACA AATTGTGTTGGGTTGTAA
AA sequence Show only first row Show all	>Potri.006G105900.1 pacid=42767328 polypeptide=Potri.006G105900.1.p locus=Potri.006G105900 ID=Potri.006G105900.1.v4.1 annot-version=v4.1 MPGQVMQEKTLQSIHVMGREKSTENSTRSPGRLEGRVAIVTGGARGIGEATVRLFARQGAKVVIADVEDALGTSLVNSLAPSVSFVHCDVSLEKDIENLI NSTISQYGKLDILFNNAGVLGNQSKNKSIVDFDVDEFDRVMHVNVRGMALGIKHAARVMIPRGGGCIISTASVAGVMGGLGPHAYTASKHAIVGLTKNTA CELGRYGIRVNCISPFGVATSMLVNAWRSSGEEEDSLNFGLPSEKEVEKMEDFVRGLANLKGPTLRARDIAEAALYLASDESKYVSGHNLVVDGGITTST NCVGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.006G105900 [exp]	0	1
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Potri.008G139100 [exp]	6.00	0.9220	Pt-PAP8.3
AT3G21680			unknown protein		Potri.002G229300 [exp]	7.93	0.9276
AT5G06200		CASP4	Casparian strip membrane domai...		Potri.016G075400 [exp]	8.00	0.9302
AT3G46540			ENTH/VHS family protein (.1)		Potri.008G055600 [exp]	8.48	0.9245
AT5G44550			Uncharacterised protein family...		Potri.001G442300 [exp]	8.54	0.9304
AT4G13580			Disease resistance-responsive ...		Potri.001G054100 [exp]	10.58	0.9266
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.001G312600 [exp]	14.69	0.9258
AT5G06200		CASP4	Casparian strip membrane domai...		Potri.006G208800 [exp]	15.65	0.9253
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G129100 [exp]	15.65	0.8961
AT4G17340		TIP2;2, DELTA-T...	tonoplast intrinsic protein 2;...		Potri.003G077800 [exp]	17.54	0.9057	Pt-TIP2.5

Compare expression of checked genes

Potri.006G105900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.