Plant FIBer expression Database

Potri.006G106000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G08840 1248 / 0 D-alanine--D-alanine ligase family (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012211
[exp]
1270 / 0 AT3G08840 1101 / 0.0 D-alanine--D-alanine ligase family (.1.2.3)
Lus10001259
[exp]
1230 / 0 AT3G08840 1063 / 0.0 D-alanine--D-alanine ligase family (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0483 PreATP-grasp PF01820 Dala_Dala_lig_N D-ala D-ala ligase N-terminus
CL0179 ATP-grasp PF07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus
Representative CDS sequence
>Potri.006G106000.3 pacid=42767268 polypeptide=Potri.006G106000.3.p locus=Potri.006G106000 ID=Potri.006G106000.3.v4.1 annot-version=v4.1
ATGGCATCGTCATATCTTTCTTTCGCTTCAAAGCTCTCTTTTCTCCATAACGGAAACTACAAAAACGATGCCGTTGGAAGGAACTTGCTGTTTGATAACC
CAAATTCGTACAAGTGGAACCGGAAATTCAGTGATTCTTGTTTTTCGAAGACGCGATGCTCCGGCGTTGGAGTAACACGCGCCGCCTCCACGACGGAGGC
AGTGGTGGATAACAATCGAGTTTCGAAAGAGGATAGTAGAGTTCTAAGAGTTGGTTTGGTTTGTGGAGGTCCTTCTGCTGAGCGTGGGATTTCCCTCAAC
TCTGCTCGATCAGTACTTGATCACATAGAGGGGGATGATTTGCAAGTGAGCTGCTATTATATTGACTATGATATGAATGCATTCGCTATATCATCTGCTC
AGGTATATTCAAATACTCCGGCGGATTTTGATTTTAAGCTTGAAAGCCTTGCCAAAGGTTTTTCGTCGTTGGATGAATTTGCAGAACATCTTGCTGCTTC
TGTGGATATAGTGTTCCCTGTTATTCATGGCCGGTTTGGTGAAGATGGTGGAATTCAGGAGTTGCTGGAAAGGCATAATGTTCCATTTGTTGGCACAGGA
TCTCGTGAGTGTCGTAAAGCATTTGATAAGTATGATGCCTCCTTGGAACTCAGCAAACAAGGATTCATAACTGTACCTAGTTTTCTAGTCCAGGGAAGTG
AAATTGAGGAATGTGAATTATCCAAGTGGTTCACAAGCAATCAATTGGACCCTAACTCTGGGAAAGTTGTGGTAAAGCCAGCTAGAGCTGGATCAAGTAT
TGGAGTTACAGTTGCTTATGGTGTTTCTGATTCTCTTAAAAAAGCAAATGATCTCATTTCAGAGGGGATAGATGATAAAATCCTTGTTGAAATATTTCTC
GAAGGAGGGAGCGAGTTTACAGCAATTGTCCTTGATGTGGGATCTGGTTTTGATTGTCACCCTGTTGTTCTACTGCCAACTGAGGTGGAGATTCAATTTC
ATGGCAGTGTTGATGTGAGAGAAGAAGATGCAATTTTCAATTACCGAAGGAAGTATCTTCCAACACAACAGGTAGCTTATCACACTCCACCTCGTTTTCC
TCTCAAAGTAATTGAAAATATTCGAGAAGGAGCATCTATTTTATTCCGTCAACTCGGTCTACGTGATTTTGCTCGGATTGATGGATGGTTTTTGCCTAAT
TCCATGCATGCATTATCATCTTCAGCTGGAAAATTTGGAAGGACTGAATTGGGCACAATAATATACAATGACATTAACCTGATTAGTGGAATGGAGCAGA
CCAGTTTTCTTTTTCAGCAAGCTTCAAAGGTTGGATTCTCTCATTCTAACATTCTTCGAAGTGTTATTCATCGTGCTTGCTTGCGGTTCCCCAATCTTGC
ATCACACAACGAAGTATCAGCTCATTTGCCAAGAAGATCGAAATCCTTGCCATTTGATGAAGCATTTAACAAACGGGAGGGTATTCGTAAAATTTTTGTC
TTGTTTGGAGGAGACACTTCAGAGCGGCAAGTATCTCTTATGAGTGGAACAAATGTTTGGCTTAACTTGCTGGCATTTGATGAACTTGATGTGACTCCTT
GTTTACTTGCCCCCTCAGACGACCATTCTGATGATGGTTCCAGAGTGGTTTGGTCATTGCCTTACTCTCTTGTGCTGAGACACACTACAGAGGAAGTTCT
TGACGCTTGCATAGAAGCTATCGAACCAGCTCAGGCCGCGCTGACTTCTCATTTGCGCAACCAAGTGATGAATGACCTCATGGAATGTCTGAAGAAGCAT
AGTTGGTTTACAGGGTTTGACATAGCTGATGAACAGCCTGTTAGATATTCATTAGAGAAGTGGATCAAGCTTGCCAAAGAAGTTCAGGCAACAGTTTTCA
TTGCAGTGCATGGAGGCATTGGTGAAGATGGTACACTTCAGTCTTTACTGGAGTCTGAAGGAGTTCCTCATACAGGTCCTGGTGCGGCAGCTTCGAAGAC
TTGCATGGACAAAGTTGCAACATCACTCGCTCTTAGTCATCTTGCAGATTTGGGAGTTCTTACCATAAACAAAGATGTGCGCAGAAAAGAGGATTTGCTG
AATATGCCTGCACTAGAGATTTGGGATGAGCTGATCTCAAAGCTTCAGTGTGAAACATTATGTGTTAAACCAGCAAGGGATGGATGCTCAACTGGGGTTG
CAAGATTATGCTGCGTGGAAGACCTTGCAGTGTATATAAAAGCTTTGAAGGATTGCCTTCTCCGGATACCACCTGATAGTTTCTCAAAGTCAAACATCCT
TTTCTTTTTGTGTAATGTTCAGTCACATGGAATGATTGAGATGCCAAGCCCTCCTCCAGAGCGTTTGATCTTTGAACCTTTTATTGAGACTGATGAGATT
GTTGTCTCATCCAAATCTGGGGGTGAAAAGGCACAAGGCCTTGTGTGGAAAGGAAACAGTCGATGGGTAGAAATTACAGTTGGTGTTATAGGAACTCTTG
GATCAATGCGCTCACTGAGCCCTAGTGTTACTGTTAAGGAAACTGGTGATATTTTATCACTTGAAGAGAAATTTCAAGGTGGAACCGGCATCAATCTTAC
TCCTCCACCGGCATCAATTGTTAGTAACGAGGCGTTGGAGAGGTGCAAACATCGTATTGAATTGATTGCAAACACTCTGCAATTAGAAGGATTTTCACGA
ATAGATGCTTTTCTTAATGTTGATAGTGGAGAGGTGCTGATTATAGAGGTCAATACTGTTCCTGGAATGACTCCTTCCACTGTCCTTATTCATCAGGCGC
TAGCAGAACAACCTCCCATGTATCCTCACAAATTCTTTCGTACGTTGCTTGATTTAGCATCAGAGAGGATCATATAG
AA sequence
>Potri.006G106000.3 pacid=42767268 polypeptide=Potri.006G106000.3.p locus=Potri.006G106000 ID=Potri.006G106000.3.v4.1 annot-version=v4.1
MASSYLSFASKLSFLHNGNYKNDAVGRNLLFDNPNSYKWNRKFSDSCFSKTRCSGVGVTRAASTTEAVVDNNRVSKEDSRVLRVGLVCGGPSAERGISLN
SARSVLDHIEGDDLQVSCYYIDYDMNAFAISSAQVYSNTPADFDFKLESLAKGFSSLDEFAEHLAASVDIVFPVIHGRFGEDGGIQELLERHNVPFVGTG
SRECRKAFDKYDASLELSKQGFITVPSFLVQGSEIEECELSKWFTSNQLDPNSGKVVVKPARAGSSIGVTVAYGVSDSLKKANDLISEGIDDKILVEIFL
EGGSEFTAIVLDVGSGFDCHPVVLLPTEVEIQFHGSVDVREEDAIFNYRRKYLPTQQVAYHTPPRFPLKVIENIREGASILFRQLGLRDFARIDGWFLPN
SMHALSSSAGKFGRTELGTIIYNDINLISGMEQTSFLFQQASKVGFSHSNILRSVIHRACLRFPNLASHNEVSAHLPRRSKSLPFDEAFNKREGIRKIFV
LFGGDTSERQVSLMSGTNVWLNLLAFDELDVTPCLLAPSDDHSDDGSRVVWSLPYSLVLRHTTEEVLDACIEAIEPAQAALTSHLRNQVMNDLMECLKKH
SWFTGFDIADEQPVRYSLEKWIKLAKEVQATVFIAVHGGIGEDGTLQSLLESEGVPHTGPGAAASKTCMDKVATSLALSHLADLGVLTINKDVRRKEDLL
NMPALEIWDELISKLQCETLCVKPARDGCSTGVARLCCVEDLAVYIKALKDCLLRIPPDSFSKSNILFFLCNVQSHGMIEMPSPPPERLIFEPFIETDEI
VVSSKSGGEKAQGLVWKGNSRWVEITVGVIGTLGSMRSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPASIVSNEALERCKHRIELIANTLQLEGFSR
IDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEQPPMYPHKFFRTLLDLASERII

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G08840 D-alanine--D-alanine ligase fa... Potri.006G106000
[exp]
0 1
AT2G27040 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PERO... Potri.016G024200
[exp]
5.38 0.7669
AT3G44730 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTE... Potri.011G165200
[exp]
6.92 0.7420
AT5G13300 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, S... Potri.003G163200
[exp]
9.16 0.7103
AT4G27190 NB-ARC domain-containing disea... Potri.001G444500
[exp]
10.81 0.7224
AT4G18820 AAA-type ATPase family protein... Potri.011G071300
[exp]
11.53 0.7306
AT1G63460 ATGPX8 glutathione peroxidase 8 (.1) Potri.001G105100
[exp]
14.38 0.7424
AT5G63700 zinc ion binding;DNA binding (... Potri.001G305900
[exp]
14.69 0.7023
AT4G23740 Leucine-rich repeat protein ki... Potri.015G023500
[exp]
17.43 0.7191
AT1G33170 S-adenosyl-L-methionine-depend... Potri.011G147600
[exp]
19.18 0.7593
AT3G30380 alpha/beta-Hydrolases superfam... Potri.010G136900
[exp]
19.59 0.6820

Potri.006G106000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.