Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38420 428 / 8e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 161 / 4e-43 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 157 / 6e-41 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 154 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 153 / 3e-40 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22470 153 / 5e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 149 / 2e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 147 / 8e-38 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G63150 144 / 6e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 144 / 7e-37 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046000 [exp] 160 / 3e-42 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 159 / 5e-42 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 158 / 8e-42 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 155 / 6e-41 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G015900 [exp] 155 / 1e-40 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 154 / 2e-40 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G234500 [exp] 154 / 3e-40 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 152 / 6e-40 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 152 / 9e-40 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001256 [exp] 528 / 0 AT2G38420 403 / 8e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002476 [exp] 484 / 3e-168 AT2G38420 363 / 4e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019697 [exp] 255 / 1e-81 AT2G38420 181 / 5e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 157 / 4e-41 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 155 / 2e-40 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 155 / 3e-40 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 152 / 1e-39 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 144 / 9e-37 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 145 / 1e-36 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 144 / 1e-36 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G106400.3 pacid=42768816 polypeptide=Potri.006G106400.3.p locus=Potri.006G106400 ID=Potri.006G106400.3.v4.1 annot-version=v4.1 ATGGCTAGTTGCACTTCTAAGAAGAGTGCTAGTTTCTTCCTAAGAAAACACAGGAAATGGCCATACTCACCTTACAAGGCCAGATGGCACAGAATTTTCA ATCAACAACAAGCCATGCAATCTCTTAAACAATCAGCCCTAAAACCGCCGCAACAAGAATCTCCCAACAAACCCCATCTTCTATCTTCTCTTATTCACTC CTTTAGCATCTACGATGTTGAACCAGCCCCTAAAGCCTTTGACTTTATATTCAAAACCCTTGTTAAAACCTCTCAATTCCATCACATTCCTTCAGTTCTT GACCATCTCGAAAAAGTTGAAAGCTTTGAACCACCTGAATCTACTTTTGCTTATCTGATTGAAGTTTATGGCAGAACTAATAAAACCCATGAAGCAATTG AGTTGTTCTACAGAATCCCAAAGTTTAGATGTGTCCCTTCTGTTTACTCACTCAATACTCTGATTTCAGTTCTTTGTAGAAACAGTAAAGGTTTAAAGTT GGTGCCTGAAATCTTGTTGAAGAGTCAGGTTATGAATATTCGAGTGGAAGAATCGACTTTTCAGGTATTGATTACTGCTCTTTGTAGGATTAGAAAGGTG GGTTTTGCTATTGAGATGCTGAATTGTATGGTGAATGATGGGTTTATTGTAAATGCAGAAATATATTCTTTGTTGTTGTCATGTCTCTGTGAACAGAAAG ATGCAACTAAATTCGAGGTCATAGGGTTTTTAGAGCAATTGAGGAAGTTAGGATTTTTCCCTGGAATGGTGGATTATAGTAATGTTATTAGATTTTTAGT GAAAGGAAAAAGGGGTTTGGATGCTTTGCATGTTTTGAATCACATGAAATCAGATAGAATTAAGCCTGATATCTTTTGCTACACTATGGTTTTGCATGGG GTGATTGAAGATAAGGACTATTTGAAGGCGGATGAGTTGTTCGATGAGTTGCTTGTTTTTGGTTTGGTTCCTGATGCTTATACTTACAATGTGTATATAA ATGGTTTGTGTAAGCAAAATAATGTCCAAGCGGGGATCAAGATGGTTGCTAGTATGGAGGAATTGGGATGCAAGCCTAATTTGATTACTTATAATATGTT AGTGAAGCAGTTGTGTAAGGTTGGAGAACTTAGTAAGGCAGGTGAGCTTGTGAGGGAGATGGGATTGAAAGGAATTGGGCTAAATATGCAGACATATAGG ATAATGATTGATGGCTTGGCAAGCAATGGTAAAATTGTTGAAGCATGTGGTTTATTTGAGGAAGCATTGGATAAGGGTTTATGCACTCAGAGTTTGATGT TTGATGAGATAATTTGTGGTTTATGCCATAGAGACCTAAGTTGTAAAGCACTCAAATTACTTGAGAAAATGGTTGGTAAGAATGTTTCTCCTGGCGCTAG AGCCTGGAAAGCGCTTCTCCTCAGCTCTGGATTCAAACTTGATTCTGTGGAGACTAAATTGTTTAGTTTGGTGGACTCAAATCAAACTCAATTAAGCAGT GAGAATGTTGCTGTTGAGTAA
AA sequence Show only first row Show all	>Potri.006G106400.3 pacid=42768816 polypeptide=Potri.006G106400.3.p locus=Potri.006G106400 ID=Potri.006G106400.3.v4.1 annot-version=v4.1 MASCTSKKSASFFLRKHRKWPYSPYKARWHRIFNQQQAMQSLKQSALKPPQQESPNKPHLLSSLIHSFSIYDVEPAPKAFDFIFKTLVKTSQFHHIPSVL DHLEKVESFEPPESTFAYLIEVYGRTNKTHEAIELFYRIPKFRCVPSVYSLNTLISVLCRNSKGLKLVPEILLKSQVMNIRVEESTFQVLITALCRIRKV GFAIEMLNCMVNDGFIVNAEIYSLLLSCLCEQKDATKFEVIGFLEQLRKLGFFPGMVDYSNVIRFLVKGKRGLDALHVLNHMKSDRIKPDIFCYTMVLHG VIEDKDYLKADELFDELLVFGLVPDAYTYNVYINGLCKQNNVQAGIKMVASMEELGCKPNLITYNMLVKQLCKVGELSKAGELVREMGLKGIGLNMQTYR IMIDGLASNGKIVEACGLFEEALDKGLCTQSLMFDEIICGLCHRDLSCKALKLLEKMVGKNVSPGARAWKALLLSSGFKLDSVETKLFSLVDSNQTQLSS ENVAVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38420			Pentatricopeptide repeat (PPR)...		Potri.006G106400 [exp]	0	1
AT3G62900			CW-type Zinc Finger (.1)		Potri.013G020200 [exp]	2.82	0.7609
AT2G26310			Chalcone-flavanone isomerase f...		Potri.018G048500 [exp]	4.47	0.7178
AT5G01660			unknown protein		Potri.016G127600 [exp]	8.36	0.7034
AT4G21300			Tetratricopeptide repeat (TPR)...		Potri.011G156800 [exp]	9.05	0.7531
AT1G55750			BSD domain (BTF2-like transcri...		Potri.007G107400 [exp]	17.66	0.6928
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	19.00	0.6526
AT5G53930			unknown protein		Potri.001G397001 [exp]	19.07	0.6849
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.012G089000 [exp]	25.57	0.7217
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.007G010500 [exp]	29.24	0.6763
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.005G094200 [exp]	30.78	0.6702

Compare expression of checked genes

Potri.006G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.