Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08850 1968 / 0 ATRAPTOR1B, RAPTOR1B HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G01770 1788 / 0 RAPTOR2, ATRAPTOR1A, RAPTOR1A RAPTOR2, HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT2G40360 67 / 8e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 56 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 53 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 53 / 2e-06 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G13480 48 / 5e-05 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 47 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132000 [exp] 2363 / 0 AT3G08850 1862 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.008G002300 [exp] 56 / 2e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 54 / 1e-06 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G222500 [exp] 50 / 1e-05 AT2G40360 959 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 49 / 3e-05 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G069700 [exp] 48 / 6e-05 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 48 / 6e-05 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.010G100101 [exp] 47 / 6e-05 AT2G46290 553 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G009600 [exp] 45 / 0.0004 AT2G40360 914 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025263 [exp] 2160 / 0 AT3G08850 2054 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10009083 [exp] 2124 / 0 AT3G08850 2031 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10014156 [exp] 1414 / 0 AT3G08850 1330 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10022752 [exp] 643 / 0 AT3G08850 630 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10014157 [exp] 179 / 2e-51 AT3G08850 160 / 9e-46 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10041007 [exp] 58 / 5e-08 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 58 / 6e-08 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10026094 [exp] 53 / 1e-06 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10033092 [exp] 53 / 2e-06 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10011224 [exp] 51 / 1e-05 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G106600.1 pacid=42769615 polypeptide=Potri.006G106600.1.p locus=Potri.006G106600 ID=Potri.006G106600.1.v4.1 annot-version=v4.1 ATGGCATTGGGAGATTTAATGGCGTCAAGATTCTCCTCACAATCTCCAGTTGCTTTTGTATCGAACCATTATGATCATTATCCGTCAAGTCACGAAGATG ATGCTATTGATGTAGCCAGAAGAGATGACAATAATAATAGTAATAATAATAGAGATAGAGATTCTGATACTGCTAGCACTAGTAATTACGGCGGAGGCAA TGCCACGGCAAGCACCACCGCCACAACCACTACTAGTACGGCGTATTTGCCGCAGACTGTTGTTTTGTGTGAGCTTAGACACGAGGCATTTGAAGCTTCT GTGCCTACCGGTCCGTCTGATAGTGGACTCGTTTCGAAATGGCGGCCCAAGGACCGAATGAAGACTGGATATGTAGCTCTAGTTTTGTGTTTAAACATCA GTGTTGATCCTCCGGATGTAATAAAGATATCCCCTTGTGCCAGAATGGAGTGCTGGACAGATCCACTTTCAATGGCACCTCAAAAAGCTCTTGAAACAAT TGGAAAAAACTTAAGCATTCAGTATGAAAGGTGGCAACCTAAGGCTCGCTACAAGGTTCAACTTGATCCTACTGTTGATGAAGTGAAGAAACTTTGTAAT ACATGCCGAAAATATGCCAAGTCTGAGAGAGTTTTGTTTCATTACAATGGACATGGTGTTCCAAAGCCAACTGCTAACGGTGAAATCTGGCTATTCAATA AGAGTTATACACAATACATTCCCTTGCCAGTCAGTGATCTTGATTCCTGGCTGAGAACACCGTCAATCTATGTTTTTGATTGCTCTGCTGCTGGGATGAT AGTCAATGCATTTCTGGAGCTTCATGACTGGAATGCTTCTGGCTCTGCTGGATCCACGCGGGATTGCATTTTGCTTGCAGCCTGTGAAGCACACGAGACT TTGCCACAAAGTGATGAATTTCCTGCTGATGTGTTCACTTCATGCCTCACCACTCCTATCAAGATGGCATTGAAATGGTTCTACAGACGTTCACTACTTT GTGACTCCCTTGACTACTCATTAATTGATAAAATTCCTGGCCGGCAAAATGATCGTAAAACGCTTCTGGGAGAATTGAACTGGATCTTTACTGCAGTGAC AGACACAATTGCTTGGAATGTTCTTCCTCGTGATCTTTTCCAGAAGTTGTTCAGGCAAGATTTGCTAGTTGCCAGTCTGTTCAGAAATTTTTTGCTTGCT GAAAGAATTATGCGTTCGGCAAATTGTTCTCCAATTTCTCATCCAATGTTGCCACCAACCCATCAGCATCATATGTGGGATGCATGGGATATGGCTGCTG AAATTTGCCTCTCTCAGCTTCCATCTCTGGTCGAGGATCCAAATGCAGAATTCCAGCCGAGTCCTTTTTTTACTGAACAACTGACGGCTTTTGAGGTGTG GTTGGACCATGGATTTGAACATAAGAAGCCACCCGAGCAGTTGCCTATTGTTCTTCAGGTTCTGCTAAGTCAATGTCATCGGTTCCGAGCACTGGTGCTT CTAGGGAGATTCCTTGATATGGGACGCTGGGCAGTGGATCTGGCTTTATCTGTTGGAATATTTCCATATGTTTTGAAGCTGTTGCAAACAACAACACCAG AACTAAGGCAAATTCTTGTATTCATATGGACAAAAATTCTAGCGCTGGATAAGTCATGCCAGGTTGATCTTGTTAAGGATGGGGGGCATACATATTTTAT TAGGTTTCTCGACAGCTTGGAAGCATATCCAGAACAGCGTGCAATGGCTGCATTTGTTTTGGCTGTTATTGTTGATGGACACAGACGGGGCCAGGAAGCC TGTATTAAAGCTGGTTTGATTCATGTGTGCTTGAAGCACCTTCAAGGTTCAGTGCCAAATGACACACAAACTGAACCCTTGTTTCTTCAGTGGCTATGCC TCTGCCTGGGAAAGCTGTGGGAGGATTTCACAGAGGCTCAGATACTAGGTTTGCAGGCTGACTCCCCAGCAATATATGCTCCTCTACTGTTGGAGCCCCA ACCAGAGGTTAGGGCTTCTGCTGCATTTGCACTGGCCACCTTGCTTGATGTTGGGGGTGATGTCTGCAGGGATGGTGCTACTGGAGATGATGAGTTTGAT GATGATGAAAAAATTAGAGCTGAAATTAGTATTGTTAGAAGTCTATTAAGTGCTGTTTCAGATGGAAGTCCTCTGGTCAGGGCGGAGGTTGCTGTAGCTC TGGCACGCTTTGCATTTGGCCACAAACAGCACCTCAAGTCAATTGCTGCCTCCTATTGGAAACCTCAGTCTAATTCTCTACTCAGCTCATTACCTTCTTT GGCCCATATAAAAGCTACAGGTAGTGGACATGCCAACCCTAATCAGTATGTGCCACATGCAAGTATTGTTTCATCTCAATTTGGCCCTCTGACAAGAGTT GGTAGTGACAGCCCATCCGTGGTTCGAGATGGAAGGGCTTCCACTAGCAGTCCTACTACAGCTGGAATTATGCATGGATCACCATTATCTGATGATTCAT CTCTGCATTCTGATTCTGGTATATTGAATGACATTGTCAGCAATGGGGAAGTACTCCATTCAAGGCCAAAGCCTCTGGATAATGCATTATATTCCCAGTG TGTGCTGGCTATGTGCACTTTGGCCAAGGATCCTTCTCCACGCATAGCAAGCCTTGGTCGAAGGGTACTGTCGATTATTGGGATTGAACAAGTGGTGACA AAATCTGTAAATTCCACTGGTAGCAGTGGTCCCAAAACTTCATCTCCAAGTCTTGCTGGACTGGCTCGTTCATCATCATGGTTAGACATGCATGCAGGTC ACATTCCTTTGACATTCAGAACTCCTCCTGTCAGTCCTCCACGATCAAGCTACTTAACAGGAATGCGTAGGGTGTGTTCTTTGGAGTTCAGGCCGCACCT TATGAATTCTCCAGATTCAGGATTAGCTGATCCTCTTTTAGCTTCTGTTGGATCTTCTGGAGGCACAGAGCGGAGTTTGCTTCCTCAGTCAACTATCTAC AATTGGAGTTGTGGTCACTTCTCAAAGCCGCTTCTCACCACACCGGATGATACTGAAGAAATATTAGTTAGAAGGGAAGAAAGGGAAAAATTTGCACTGG AACATATTGCAATGTGTCAGCACTCTTCTGTTAGCAACCTTAATAACAGAATTGCTAGCTGGGATACAAAGTTTGAAACTGGTACAAAGACAGCCTTGCT GCAGCCTTTCTCTCCTATTGTGGTTGCTGCTGACGAGAATGAACGAATTAGGGTGTGGAATTATGAGGAAGCTACCCTTCTGAATGGGTTTGATAATCAT GATTTTCCTGACAGAGGAGTTTCGAAGCTGTGTCTTGTAAACGAGCTAGATGACAGTTTGCTCCTTGTTGCTTCATGTGATGGAAATATACGGATTTGGA AAGACTACACTGTGAAGGGTAAGCAAAAGCTTGTCACTGCATTTTCTTCAATCCAAGGTCATAAACCTGGTGTGCGGAGTTTGAATGCTGTTGTGGACTG GCAACAACAATCTGGATATCTGTATGCTTCGGGTGAGATATCATCCATCATGCTTTGGGACCTGGATAAAGAGCAGCTTATTCATTCTATTCCTTCATCA TCAGATTGTAGCGTCTCAGCAATGTCTGCTTCTCAAGTTCATGGAGGTCAATTTACTGCTGGTTTTGTGGATGGATCTGTCAAACTCTATGATGTCAGAA CACCTGAAATGCTTGTTTGTGCTACTCGGCCGCACACTGAGAATGTAGAAAAAGTTGTGGGGATTGGCTTTCATCCTGGGCTTGATCCTGGAAAGATTGT CAGTGCATCCCAGGCTGGTGACATGAAGTTCCTGGATATGAGAAATTATAGAGATCCCTATCTCACGATCAAGGCCCACAGGGGCTCACTCACAGCTTTA GCTGTTCATAGGCATGCCCCTATTATTGCCAGTGGATCGGCAAAACAAATTATTAAATTATTCAGTCTAAATGGTGAACCATTAGGCTCCATTAGATACC ACCTAACCATAATGGCCCAGAAGATCGGTCCTGTAAGCTGCCTCACCTTCCATCCTTACCAGGTACTCCTTGCTGCTGGTGCTACTGATGCTTTATTCTC AATCTACGCCGATGACAACACTCAAGCAAGATGA
AA sequence Show only first row Show all	>Potri.006G106600.1 pacid=42769615 polypeptide=Potri.006G106600.1.p locus=Potri.006G106600 ID=Potri.006G106600.1.v4.1 annot-version=v4.1 MALGDLMASRFSSQSPVAFVSNHYDHYPSSHEDDAIDVARRDDNNNSNNNRDRDSDTASTSNYGGGNATASTTATTTTSTAYLPQTVVLCELRHEAFEAS VPTGPSDSGLVSKWRPKDRMKTGYVALVLCLNISVDPPDVIKISPCARMECWTDPLSMAPQKALETIGKNLSIQYERWQPKARYKVQLDPTVDEVKKLCN TCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPVSDLDSWLRTPSIYVFDCSAAGMIVNAFLELHDWNASGSAGSTRDCILLAACEAHET LPQSDEFPADVFTSCLTTPIKMALKWFYRRSLLCDSLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLA ERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVEDPNAEFQPSPFFTEQLTAFEVWLDHGFEHKKPPEQLPIVLQVLLSQCHRFRALVL LGRFLDMGRWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQEA CIKAGLIHVCLKHLQGSVPNDTQTEPLFLQWLCLCLGKLWEDFTEAQILGLQADSPAIYAPLLLEPQPEVRASAAFALATLLDVGGDVCRDGATGDDEFD DDEKIRAEISIVRSLLSAVSDGSPLVRAEVAVALARFAFGHKQHLKSIAASYWKPQSNSLLSSLPSLAHIKATGSGHANPNQYVPHASIVSSQFGPLTRV GSDSPSVVRDGRASTSSPTTAGIMHGSPLSDDSSLHSDSGILNDIVSNGEVLHSRPKPLDNALYSQCVLAMCTLAKDPSPRIASLGRRVLSIIGIEQVVT KSVNSTGSSGPKTSSPSLAGLARSSSWLDMHAGHIPLTFRTPPVSPPRSSYLTGMRRVCSLEFRPHLMNSPDSGLADPLLASVGSSGGTERSLLPQSTIY NWSCGHFSKPLLTTPDDTEEILVRREEREKFALEHIAMCQHSSVSNLNNRIASWDTKFETGTKTALLQPFSPIVVAADENERIRVWNYEEATLLNGFDNH DFPDRGVSKLCLVNELDDSLLLVASCDGNIRIWKDYTVKGKQKLVTAFSSIQGHKPGVRSLNAVVDWQQQSGYLYASGEISSIMLWDLDKEQLIHSIPSS SDCSVSAMSASQVHGGQFTAGFVDGSVKLYDVRTPEMLVCATRPHTENVEKVVGIGFHPGLDPGKIVSASQAGDMKFLDMRNYRDPYLTIKAHRGSLTAL AVHRHAPIIASGSAKQIIKLFSLNGEPLGSIRYHLTIMAQKIGPVSCLTFHPYQVLLAAGATDALFSIYADDNTQAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.006G106600 [exp]	0	1
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	1.41	0.8749
AT3G12590			unknown protein		Potri.008G052700 [exp]	2.00	0.8744
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.009G134300 [exp]	4.58	0.8444
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Potri.001G011900 [exp]	5.91	0.8181
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	9.48	0.8197
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	10.39	0.8060
AT1G73460			Protein kinase superfamily pro...		Potri.015G033400 [exp]	12.44	0.7637
AT4G30100			P-loop containing nucleoside t...		Potri.005G168300 [exp]	12.84	0.8001
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Potri.008G070300 [exp]	13.85	0.8135	APC1.1
					Potri.009G005300 [exp]	14.07	0.8069

Compare expression of checked genes

Potri.006G106600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.