Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40435 150 / 2e-47 unknown protein AT3G56220 130 / 2e-39 bHLH transcription regulators (.1) AT1G29270 54 / 1e-09 unknown protein AT1G12860 52 / 1e-08 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 51 / 4e-08 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT5G10570 48 / 5e-07 bHLH bHLH061 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65640 42 / 4e-05 bHLH bHLH093 beta HLH protein 93 (.1.2) AT4G09820 39 / 0.0005 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132600 [exp] 259 / 2e-90 AT2G40435 155 / 2e-49 unknown protein Potri.019G126800 [exp] 134 / 7e-41 AT2G40435 144 / 1e-44 unknown protein Potri.013G154100 [exp] 132 / 4e-40 AT2G40435 126 / 9e-38 unknown protein Potri.004G060800 [exp] 67 / 2e-14 AT1G29270 69 / 4e-15 unknown protein Potri.011G070000 [exp] 62 / 5e-13 AT1G29270 75 / 2e-17 unknown protein Potri.015G105200 [exp] 50 / 9e-08 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.012G106000 [exp] 49 / 2e-07 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.002G108400 [exp] 42 / 8e-05 AT5G65640 233 / 2e-74 beta HLH protein 93 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010217 [exp] 145 / 3e-45 AT2G40435 152 / 1e-47 unknown protein Lus10025257 [exp] 144 / 2e-44 AT2G40435 134 / 2e-40 unknown protein Lus10017415 [exp] 141 / 1e-43 AT2G40435 146 / 3e-45 unknown protein Lus10009089 [exp] 136 / 4e-41 AT2G40435 129 / 2e-38 unknown protein Lus10029251 [exp] 74 / 2e-17 AT2G40435 91 / 5e-24 unknown protein Lus10007304 [exp] 73 / 5e-17 AT1G29270 97 / 4e-26 unknown protein Lus10043199 [exp] 50 / 9e-08 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10032542 [exp] 50 / 1e-07 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10039631 [exp] 44 / 1e-05 AT5G65640 230 / 3e-74 beta HLH protein 93 (.1.2) Lus10002160 [exp] 43 / 3e-05 AT5G65640 233 / 5e-75 beta HLH protein 93 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G106900.1 pacid=42768583 polypeptide=Potri.006G106900.1.p locus=Potri.006G106900 ID=Potri.006G106900.1.v4.1 annot-version=v4.1 ATGTCTTCCAAGAAGAAAAAGAAGGCAGCTCTTTACGAGAAGCTACGTGCCGCTACCAATTCTAATGCTATGAACAAAACCTCAATCATAGTAGATGCAT CAAAATATATAGGAGAGTTGAAGAAAAAGGTGGATAGACTAAACCATGAGATTGGAACATCTTCAACCCCTCAAAATTCATTATCTGCGCAGGTTACGGT GGAAACACTAGAAAAGGGTTTCCTTATTAATGTATTTTCAGGAAAGAATTGCCCTGGTTTACTTGTCTCCATACTTGAAGCCTTTGATGAACTAGGCCTT GATGTGCTTGATGCTAGGGTTTCTTGCGAAGACAACTTCCTACTGGAAGCAATTGGTGGAGACCAAAACCAAGGTCATGATGCTCAAGTCGTGAAACAAG CAGTGCTACAAGCAATCCATAACTGGAATGGAGGGAGGTAG
AA sequence Show only first row Show all	>Potri.006G106900.1 pacid=42768583 polypeptide=Potri.006G106900.1.p locus=Potri.006G106900 ID=Potri.006G106900.1.v4.1 annot-version=v4.1 MSSKKKKKAALYEKLRAATNSNAMNKTSIIVDASKYIGELKKKVDRLNHEIGTSSTPQNSLSAQVTVETLEKGFLINVFSGKNCPGLLVSILEAFDELGL DVLDARVSCEDNFLLEAIGGDQNQGHDAQVVKQAVLQAIHNWNGGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40435			unknown protein		Potri.006G106900 [exp]	0	1
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Potri.012G114600 [exp]	8.83	0.8799
AT3G59500			Integral membrane HRF1 family ...		Potri.014G175900 [exp]	12.64	0.8448
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.002G191400 [exp]	18.05	0.8731	ARF1.2
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.014G044000 [exp]	20.49	0.8647
AT1G09575			Protein of unknown function (D...		Potri.019G133400 [exp]	21.90	0.8158
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Potri.002G052600 [exp]	26.94	0.7975
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.006G230400 [exp]	27.27	0.8535	Pt-ATKEA4.3
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Potri.004G074400 [exp]	30.28	0.8480
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.012G078700 [exp]	30.82	0.8319	ALDH1.2
AT4G17910			transferases, transferring acy...		Potri.003G093300 [exp]	33.98	0.8399

Compare expression of checked genes

Potri.006G106900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.