Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PRX1.13
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 350 / 1e-120 Peroxidase superfamily protein (.1) AT5G58400 328 / 3e-112 Peroxidase superfamily protein (.1) AT1G14550 318 / 2e-108 Peroxidase superfamily protein (.1) AT5G58390 314 / 8e-107 Peroxidase superfamily protein (.1) AT1G14540 304 / 7e-103 Peroxidase superfamily protein (.1) AT4G36430 296 / 1e-99 Peroxidase superfamily protein (.1) AT1G44970 295 / 8e-99 Peroxidase superfamily protein (.1) AT2G18150 292 / 7e-98 Peroxidase superfamily protein (.1) AT5G66390 291 / 2e-97 Peroxidase superfamily protein (.1) AT2G18140 286 / 1e-95 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132900 [exp] 524 / 0 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 503 / 0 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.013G156800 [exp] 374 / 4e-130 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 365 / 9e-127 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 356 / 2e-123 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 355 / 5e-123 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 351 / 3e-121 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 349 / 1e-120 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 348 / 2e-120 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025255 [exp] 443 / 3e-157 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10006534 [exp] 366 / 5e-127 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10009936 [exp] 363 / 4e-126 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10000346 [exp] 357 / 3e-122 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10034207 [exp] 352 / 2e-121 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10030145 [exp] 350 / 2e-120 AT5G05340 353 / 2e-121 Peroxidase superfamily protein (.1) Lus10003573 [exp] 344 / 1e-118 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10032786 [exp] 342 / 9e-118 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10009935 [exp] 339 / 3e-116 AT5G05340 358 / 9e-124 Peroxidase superfamily protein (.1) Lus10008581 [exp] 337 / 6e-116 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.006G107000.1 pacid=42769234 polypeptide=Potri.006G107000.1.p locus=Potri.006G107000 ID=Potri.006G107000.1.v4.1 annot-version=v4.1 ATGGCTTCACTTGGCATCTTCAGCCTAATTTCTACCTTGTTCCTTGTGTTGGCTCTTGCTACCACAGCTTCTTCTTCAAAAGGACTATCTCCAAATTACT ATGATTATGTGTGTCCCAAAGCTTTACCAACTATCAAACGAGTTGTTGAGGCTGCAGTTTACAACGAAAGACGCATGGGTGCTTCTCTACTACGTCTACA CTTCCATGATTGTTTTGTCAATGGTTGTGATGCATCAATTCTTTTGGATTCAACATCCGCCTTTGATAGTGAAAAGAATGCGAACCCTAACATCAACTCA ATTAGAGGATTTGAAGTTATTGACCGAATCAAGTTGGAAGTGGACAAAGCCTGTGGACGTCCGGTGGTCTCTTGCGCAGATATCTTAGCAGTAGCAGCTC GTGATTCCGTGGTTGCGCTAGGAGGGCCAACATGGGCGGTGCAGCTAGGGAGAAGAGACTCGACCACAGCTAGCAAAACCACCGCGAACAATGACATCCC AGCACCGTTTATGGACCTCCCAGACCTAATCATCAATTTTAAAAAACATGGTTTAAATAAGAAAGACCTGGTAGTTCTCTCTGGAGCCCACACTACAGGG TTTGCACAGTGTTTTACCTTCAAAGACAGAATCTACAATGAAACTAACATTGACCCTAAATTTGCACGAGAACGCAAATTAACATGTCCACGCACTGGAG GTGACTCAAACCTTGCTCCTCTAAACCCAACTCCTTCATACTTTGATGCTAGATACTATAACGATTTGTTGAAGAAAAGAGGGTTATTTCACTCTGATCA AGCACTCTTCAATGGAGGCTCAACTGATAGCTTGGTGAAGGCTTATAGCTCAAATGCCAAGGCTTTCTGGACAGATTTTGCAAATTCTATGGTGAAGATG GGGAATATAAACCCATTGACTGGAAAGCAAGGACAAACTCGTTTGAATTGCAGGAAGGTGAACTGA
AA sequence Show only first row Show all	>Potri.006G107000.1 pacid=42769234 polypeptide=Potri.006G107000.1.p locus=Potri.006G107000 ID=Potri.006G107000.1.v4.1 annot-version=v4.1 MASLGIFSLISTLFLVLALATTASSSKGLSPNYYDYVCPKALPTIKRVVEAAVYNERRMGASLLRLHFHDCFVNGCDASILLDSTSAFDSEKNANPNINS IRGFEVIDRIKLEVDKACGRPVVSCADILAVAARDSVVALGGPTWAVQLGRRDSTTASKTTANNDIPAPFMDLPDLIINFKKHGLNKKDLVVLSGAHTTG FAQCFTFKDRIYNETNIDPKFARERKLTCPRTGGDSNLAPLNPTPSYFDARYYNDLLKKRGLFHSDQALFNGGSTDSLVKAYSSNAKAFWTDFANSMVKM GNINPLTGKQGQTRLNCRKVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05340			Peroxidase superfamily protein...		Potri.006G107000 [exp]	0	1	PRX1.13
AT3G12830			SAUR-like auxin-responsive pro...		Potri.002G057500 [exp]	1.73	0.9704	SAUR13
AT4G08250	GRAS		GRAS family transcription fact...		Potri.005G175300 [exp]	1.73	0.9752
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	3.74	0.9728
AT1G14540			Peroxidase superfamily protein...		Potri.001G458700 [exp]	4.89	0.9624
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176500 [exp]	8.94	0.9524
AT4G22030			F-box family protein with a do...		Potri.004G009300 [exp]	9.74	0.9508
AT2G33580			Protein kinase superfamily pro...		Potri.007G032300 [exp]	10.48	0.9670
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039500 [exp]	10.95	0.9700
AT1G52780			Protein of unknown function (D...		Potri.006G187000 [exp]	11.48	0.9574
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239402 [exp]	11.74	0.9668

Compare expression of checked genes

Potri.006G107000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.