Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30970 630 / 0 ASP1 aspartate aminotransferase 1 (.1.2) AT5G19550 392 / 1e-134 AAT2, ASP2 aspartate aminotransferase 2 (.1) AT5G11520 389 / 9e-133 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT4G31990 384 / 1e-130 AAT3, ATAAT1, ASP5 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) AT1G62800 357 / 1e-120 ASP4 aspartate aminotransferase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143300 [exp] 616 / 0 AT2G30970 725 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.018G022200 [exp] 386 / 2e-131 AT4G31990 799 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.006G241600 [exp] 385 / 4e-131 AT5G11520 769 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.018G082500 [exp] 384 / 4e-131 AT5G19550 736 / 0.0 aspartate aminotransferase 2 (.1) Potri.006G260200 [exp] 385 / 9e-131 AT4G31990 801 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.006G241500 [exp] 348 / 3e-117 AT5G11520 652 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025252 [exp] 623 / 0 AT2G30970 557 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10020720 [exp] 616 / 0 AT2G30970 753 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10029796 [exp] 613 / 0 AT2G30970 749 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10022137 [exp] 401 / 3e-137 AT5G11520 763 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10011101 [exp] 394 / 6e-135 AT5G11520 719 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10043222 [exp] 393 / 7e-135 AT5G11520 724 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10001938 [exp] 386 / 4e-131 AT4G31990 790 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10000181 [exp] 381 / 2e-130 AT2G30970 347 / 2e-117 aspartate aminotransferase 1 (.1.2) Lus10001753 [exp] 275 / 4e-88 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.006G107100.3 pacid=42767889 polypeptide=Potri.006G107100.3.p locus=Potri.006G107100 ID=Potri.006G107100.3.v4.1 annot-version=v4.1 ATGTGGAAGTGCTTTTTGACAAGAACATCAAGATGCTTCTCAACATCAGCAGGCAACAAGGCACTTAAATGGTGGGATCATGTAGCCCCAGCTCCAAAAG ATCCCATTACTAGTGTTACTGAGGCTTTTCTTGCTGACGCTAGTCCCACAAAGATCAATCTTGGAGTGGGAGCTTATAGAGATGATGAAGGGAAACCTGT TGTCCTTCAATGTGTTAGAGAGGCTGAGGCAAAGATTGCTGGTTGTGACTTCTTAGGTATTGGCAGGGAGTCGGTCTCTTCTGCAGTGAGTTCAAAACTG GTTGAGGAGAGTGTCAAATTGGTTTATGGAATGAATTCGGACATTATAAAAGAAGGGAGGTTTGCTGGAGTTCAAGCTCTATCAGGAACCGGTGCATGTC GTCTCTTTGCTGAGTTCCAGAGGCGTTTCTATCCTGGATCTCAAATATATATGACTGGTCCAACTTGGTCCAACCACCATAACATATGGAGAGATGCCCT CGTTCCAGAGAGAACTTTTCACTACTACCATCCTGATTCAAAGGGTTTAAATTTTTCTGCTCTTATGGATGATGTCAAGAATGCCCCAGATGGTTCTTTT TTCTTACTCCACCCTTGTGCTCACAACCCAACTGGGGTTGACCCTACCGAGGAACAGTGGAGAGAAATTTCGTATCTTTTTAAGGTAAAAAATCATTTCC CCTTCTTTGACATGGCTTATCAAGGTTTTGCAAGTGGGGACCTCGACAGGGATGCCCAATCAATCCGGATTTTTGTTGAAGATGGGAACTTAATAGGTTG TGCTCAATCCTTTGCGAAGAACATGGGATTATATGGACATCGAGTTGGTTGTCTCAATGTTCTCTGCAATGATGCAAAGCAAGCAGTTGCAATTAAAAGT CAACTGCAGCAGATTGCCCGGGCAATGTATAGCAGTCCTCCTGTTCATGGTATATTACTGGTCTCAGGTATCTTGAGTGATCCTAATATGAAAGCACTTT GGGTCGAAGAGGTGAAGGTGATGGCAAATCGCATTCAAAGTCTGCGGACTACTCTGCGGAAAAGCCTTGAGCAATTGAGTTCTTCGCTCAATTGGGAACA CATAACTAATCAGGTTGGGATGTTTTGCTTCTCCGGCTTGACCCCTGAGCAGGTTGATCGGCTGCAAAGGGGATTTCACATTTACATGACTCTTGATGGA CGTATGAGCATGGCTGGTGTTACCACAGGCAATGTGAGTTATTTAGCAAATGCAATTCATGAAGTAACCAAATTTGGTTAG
AA sequence Show only first row Show all	>Potri.006G107100.3 pacid=42767889 polypeptide=Potri.006G107100.3.p locus=Potri.006G107100 ID=Potri.006G107100.3.v4.1 annot-version=v4.1 MWKCFLTRTSRCFSTSAGNKALKWWDHVAPAPKDPITSVTEAFLADASPTKINLGVGAYRDDEGKPVVLQCVREAEAKIAGCDFLGIGRESVSSAVSSKL VEESVKLVYGMNSDIIKEGRFAGVQALSGTGACRLFAEFQRRFYPGSQIYMTGPTWSNHHNIWRDALVPERTFHYYHPDSKGLNFSALMDDVKNAPDGSF FLLHPCAHNPTGVDPTEEQWREISYLFKVKNHFPFFDMAYQGFASGDLDRDAQSIRIFVEDGNLIGCAQSFAKNMGLYGHRVGCLNVLCNDAKQAVAIKS QLQQIARAMYSSPPVHGILLVSGILSDPNMKALWVEEVKVMANRIQSLRTTLRKSLEQLSSSLNWEHITNQVGMFCFSGLTPEQVDRLQRGFHIYMTLDG RMSMAGVTTGNVSYLANAIHEVTKFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Potri.006G107100 [exp]	0	1
AT5G66985			unknown protein		Potri.005G131000 [exp]	2.00	0.9304
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218775 [exp]	3.31	0.9408
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218750 [exp]	8.12	0.9195
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218725 [exp]	8.24	0.9195
AT5G39890			Protein of unknown function (D...		Potri.019G038851 [exp]	10.95	0.9026
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.002G201600 [exp]	11.18	0.8688
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218300 [exp]	11.61	0.9175
AT2G44310			Calcium-binding EF-hand family...		Potri.014G161200 [exp]	12.72	0.8640
AT2G44310			Calcium-binding EF-hand family...		Potri.002G219000 [exp]	12.96	0.9124
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.002G020800 [exp]	13.56	0.6858

Compare expression of checked genes

Potri.006G107100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.