Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40475 48 / 8e-07 ASG8 ALTERED SEED GERMINATION 8, unknown protein AT5G01790 45 / 8e-06 unknown protein AT3G56260 41 / 0.0001 unknown protein AT1G06930 40 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133200 [exp] 193 / 1e-62 AT2G40475 50 / 1e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.013G083101 [exp] 87 / 2e-21 AT2G40475 60 / 3e-11 ALTERED SEED GERMINATION 8, unknown protein Potri.019G127400 [exp] 78 / 6e-18 AT1G06930 / unknown protein Potri.013G156100 [exp] 76 / 4e-17 AT1G06930 / unknown protein Potri.006G167300 [exp] 45 / 6e-06 AT4G25845 78 / 2e-18 unknown protein Potri.018G091900 [exp] 45 / 8e-06 AT4G25845 54 / 2e-09 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012896 [exp] 69 / 4e-14 AT2G40475 52 / 6e-08 ALTERED SEED GERMINATION 8, unknown protein Lus10030550 [exp] 67 / 3e-13 AT5G01790 50 / 2e-07 unknown protein Lus10009096 [exp] 66 / 4e-13 AT1G06930 47 / 2e-06 unknown protein Lus10025251 [exp] 65 / 5e-13 AT1G06930 47 / 8e-07 unknown protein Lus10014158 [exp] 56 / 2e-09 AT1G06930 45 / 8e-06 unknown protein Lus10034209 [exp] 55 / 2e-09 AT1G06930 52 / 8e-09 unknown protein Lus10029060 [exp] 54 / 4e-09 AT5G01790 46 / 2e-06 unknown protein Lus10019869 [exp] 45 / 1e-05 AT4G25850 48 / 4e-07 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Lus10025480 [exp] 42 / 0.0001 ND / Lus10006969 [exp] 41 / 0.0004 AT4G25850 57 / 7e-10 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G107200.1 pacid=42768463 polypeptide=Potri.006G107200.1.p locus=Potri.006G107200 ID=Potri.006G107200.1.v4.1 annot-version=v4.1 ATGCTTAGGAGGAGTGCTACTCCAGACATGGACCTTCCGCAGAAAGCCCTCCAGATTAAGCAAGATGACAAGTTTTTTTCCAGGCTTCTGTCCAGGGAAA GCTCCATGGCTAACCCTTCTTTTAGAGTGTATTATGGTGGGGTATCTGTTGGTGTTCCATTTGTGTGGGAGTCTCAGCCTGGTACCCCCAAGTACACATT TTGTGAAAATACACTCCCTCCTCTAACTCCACCTCCCTCTTACTATAGAAATTCTGATAAAAAAACCATCAAGAAACACTCAAGATCCAGTCTTTTACAC TTGTTATTTTCAAGGAACAATCCCAAGAAAAACAACGTGTCCACTTCTGCAACAAATTTGTCATCAACCCCGTCTTCTGCATCATGGTCATCTTTGAATT CATCAAGTCTTCTGACTCCAAGAAAGTACCATGAGAGGAGCAGGTATTCTAGCCGTGGATCGTCATTTGATTCGAGGGTTTTTGAAGATGTTGAAGAATC ACACATGGGATCACCTACTTCAACTTTGTGCTTTGGCATTAGCGGGAGAAATGCCAGTACCGGTGGGCTTCGAGGATGCTATGGTGTGTGGTAG
AA sequence Show only first row Show all	>Potri.006G107200.1 pacid=42768463 polypeptide=Potri.006G107200.1.p locus=Potri.006G107200 ID=Potri.006G107200.1.v4.1 annot-version=v4.1 MLRRSATPDMDLPQKALQIKQDDKFFSRLLSRESSMANPSFRVYYGGVSVGVPFVWESQPGTPKYTFCENTLPPLTPPPSYYRNSDKKTIKKHSRSSLLH LLFSRNNPKKNNVSTSATNLSSTPSSASWSSLNSSSLLTPRKYHERSRYSSRGSSFDSRVFEDVEESHMGSPTSTLCFGISGRNASTGGLRGCYGVW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.006G107200 [exp]	0	1
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G018500 [exp]	3.16	0.7979
AT1G79420			Protein of unknown function (D...		Potri.008G081700 [exp]	3.46	0.7664
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.008G155100 [exp]	3.46	0.7994
AT5G26594		ARR24	response regulator 24 (.1)		Potri.002G253000 [exp]	4.24	0.8253
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011000 [exp]	4.58	0.8097
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.004G002500 [exp]	5.47	0.7525
AT5G66390			Peroxidase superfamily protein...		Potri.005G118700 [exp]	5.91	0.7900
AT5G06730			Peroxidase superfamily protein...		Potri.001G012901 [exp]	8.48	0.7971
AT5G20820			SAUR-like auxin-responsive pro...		Potri.006G137000 [exp]	9.74	0.7371	SAUR6
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019100 [exp]	10.58	0.7451

Compare expression of checked genes

Potri.006G107200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.