Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51730 183 / 6e-58 saposin B domain-containing protein (.1) AT5G01800 153 / 4e-46 saposin B domain-containing protein (.1) AT1G34460 41 / 0.0006 CYCB1;5, CYC3, CYCB1;4 CYCLIN 3, CYCLIN B1;5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133400 [exp] 338 / 7e-119 AT3G51730 178 / 5e-56 saposin B domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009099 [exp] 211 / 2e-63 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10025248 [exp] 198 / 2e-63 AT3G51730 209 / 3e-68 saposin B domain-containing protein (.1) Lus10014162 [exp] 192 / 3e-60 AT5G01800 176 / 4e-54 saposin B domain-containing protein (.1) Lus10022750 [exp] 190 / 2e-59 AT5G01800 184 / 2e-57 saposin B domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03489 [poplar] [flax] SapB_2 Saposin-like type B, region 2 PF05184 [poplar] [flax] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Potri.006G107300.2 pacid=42769981 polypeptide=Potri.006G107300.2.p locus=Potri.006G107300 ID=Potri.006G107300.2.v4.1 annot-version=v4.1 ATGGACATGAGAATAGGGCTGTTATTTCTTCTCACTCTAAGTGCTGCTGGGTCCACTGCTGCTAGACAAATGGCAGCCACTGAGATTTTCAGGACAACCA CAGGAACCTATGATATATCAGCTATAAAAATGAAAAACCAGGAGCAAGAAACAGATATTCAAACTTCAAACAATGTTACCAGGAAAGATGAGGTGTGCAC ATTGTGTGAGGAGTTTGCTGCCCAGGCACTTGATTACATGGCTGAAAACAAAACCCAGACTGAAATTCTTGAAATCCTTCACAAAACCTGTTCTCGGTTG ACTACTTTCAAGCAAGAGTGCATCACTTTGGTGGACTACTATTCTTCTATTTTCTTCTCATATGTTTCCTCTGTGCAATCTGATGATTTCTGTCGCAAAT ACAATCTCTGTCATGAAATGGAAATCTTCTCTGCAAAACACCAAGAGGATAGCTGTAGCATTTGTCAACATGCTATTTCAGAAGTATTAGTCAAGTTGAA AGATCCTGACACACAGCTGGAAATAATCGATTTACTTTTGAAGGCATGCAACTCCATGGAGAATTATGCTAAAAAGTGCAAAAGGATGGTTTTTGAGTAT GGCCCCCTGATTCTTATCAATGCAGAGCAGTTTCTGGAAACAAAAGATGTATGCACACTGTTACATGCCTGCAAAGTGCCAAAAGACAGTGGTGAGCAAG CATCGACAATGCTGACGGCTGATTCATAA
AA sequence Show only first row Show all	>Potri.006G107300.2 pacid=42769981 polypeptide=Potri.006G107300.2.p locus=Potri.006G107300 ID=Potri.006G107300.2.v4.1 annot-version=v4.1 MDMRIGLLFLLTLSAAGSTAARQMAATEIFRTTTGTYDISAIKMKNQEQETDIQTSNNVTRKDEVCTLCEEFAAQALDYMAENKTQTEILEILHKTCSRL TTFKQECITLVDYYSSIFFSYVSSVQSDDFCRKYNLCHEMEIFSAKHQEDSCSICQHAISEVLVKLKDPDTQLEIIDLLLKACNSMENYAKKCKRMVFEY GPLILINAEQFLETKDVCTLLHACKVPKDSGEQASTMLTADS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51730			saposin B domain-containing pr...		Potri.006G107300 [exp]	0	1
AT3G59110			Protein kinase superfamily pro...		Potri.002G059000 [exp]	3.46	0.9281
AT1G72220			RING/U-box superfamily protein...		Potri.002G101800 [exp]	4.47	0.9110
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Potri.010G164300 [exp]	6.92	0.8850	VTI12.2
AT2G20230			Tetraspanin family protein (.1...		Potri.002G253500 [exp]	8.18	0.8492
AT1G47200		WPP2	WPP domain protein 2 (.1)		Potri.002G122000 [exp]	9.48	0.9037	Pt-MAF1.1
AT4G01575			serine protease inhibitor, Kaz...		Potri.002G182800 [exp]	13.07	0.8800
AT5G43190			Galactose oxidase/kelch repeat...		Potri.002G118700 [exp]	14.14	0.9017
AT4G27435			Protein of unknown function (D...		Potri.011G122700 [exp]	14.28	0.9066
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.010G141600 [exp]	14.28	0.9090
AT2G03200			Eukaryotic aspartyl protease f...		Potri.019G002100 [exp]	16.88	0.9047

Compare expression of checked genes

Potri.006G107300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.