Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51650 670 / 0 unknown protein AT3G51640 648 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133700 [exp] 1288 / 0 AT3G51650 706 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009100 [exp] 805 / 0 AT3G51650 721 / 0.0 unknown protein Lus10025247 [exp] 803 / 0 AT3G51650 723 / 0.0 unknown protein Lus10025250 [exp] 787 / 0 AT3G51650 686 / 0.0 unknown protein Lus10009097 [exp] 428 / 2e-139 AT3G51650 360 / 2e-114 unknown protein Lus10009098 [exp] 268 / 3e-84 AT3G51650 294 / 3e-95 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G107500.2 pacid=42767225 polypeptide=Potri.006G107500.2.p locus=Potri.006G107500 ID=Potri.006G107500.2.v4.1 annot-version=v4.1 ATGTGTATACTGTGTGTGATACAAAAGTGGTCTCGCCGGGTTGCTACGATGCTGCCTTGGTTAGTTATTCCTTTGATAGGATTATGGGCACTTTCACAGC TATTGCCGCCGGCATTTCGTTTTGAGATTACATCGCCGAGACTGGCGTGTGTTTTTGTGCTCCTGGTTACTTTATTTTGGTACGAGGTTTTGATGCCACA GCTGTCTGCTTGGCGGGTGCGTAGAAATGCACGATTGAGGGAGAGGAAAAGGTTTGAAGCTATTGAATTGCAGAAGCTTAGGAAAACTGCTACGAGGAAG TGTAGGAATTGTTTGAGTCCATATAAGGATCAGAATCCGGGTGCTGGTAAGTTTATGTGTTCTTATTGTGGGCATATTTCGAAACGGCCAGTTTTGGATT TGCCTGTACCACCTGGGTTGGGGATTTCAAATTCTGGGATTATTAAGGATTTGGTGGGGAAAGGTGGGAAGTTACTGAATGGCAAGGCGTGGAGTGATAA TGGATGGATGTGTAGTCAGGAGTGGTTAGATAATGGTGGTTGGGCTGGTGGGTCTGTAGCTGGGAAGTCTAGTTATTGGAGGAAGAATGGGAGTGGGATT TTTGGAGGGGATGGACATTGTTTGGCCGAGACATCATATTCAGGGGTTGTAATTTTTGCTTGCAAGGTGTTGACATCTTTTTTCTTGAGCATCCGGTGGC TTTGGAGGAAGATTTTTAGGACTAGTTCCTCTGAGGATGGCTCTTCTGATGCCGAGCATAGGGTGATGTTGGCTAATAGGCGCGAGAATGGGGAAAACTT TCATGAGAGTAGAGGAGAGAAAGCACGCAGGAAAGCTGAAGAGAAGAGACAGGCTAGGTTAGAGAAGGAGCTCTTAGAGGAGGAAGAGAAAAAGCAAAGG GAGGAGGTTGCTAGATTGGTAGAGGAACGTAGGAAGCTGAGGGATGAGATAATGGAGGCTGAAAGGGATCGAAGTAGATCATCACCACTAACCAGGGAGA AAAATAGTAGGAAGGAAGCAGAAAAGAAACGTCAGGAAAGAAGGAAAGAGAAAGACAAGGGGTCTAGTAAGAGCAACTCTGATGCAGAAGATTTGGAAAA GAAAGTTGGTAAGGAAAGTGATCAGAAGCGGGATGTTGAGAAGAAGAGTGAAATTGAGCGCCGTCAACATCAAAAAACTGGGACAGAGAGTGTAAAAGGT CAGAACATTGAATTGGGACATGGGATTAAGAATACACCTGGAAGCAATTTTAACCGGGGCAATGCTGGATCTAGGTATTTTGATCGAATGAAGGGTACAT TTTTGTCTTCTTCTAGAGCTTTTAGCGGAGGTGGTTTCTTTGGAAAACCTGCTAACATGCCTGCTATGGTCACTAAAGAAAATAAGCCCAACAGTTCTAT AGATCCTGTTCATACTTCTGCCTATAGGAGAGAGATATATCCACCTGACCGTCTGGCTGGGAAAGCAAGTCTGAATGGAGATGAAAGGAACATCTATCGT CCTGTGCTCTCTGAAACGCAACCAAGCCAACCTAAGAAAACATGGCAGCAATTATTTGCACGCTCATCACCTGCTCCTTCATCCTCAAATGCAAATGTCA TCTGTAGACCAAATTCAAAACAAGCAGAAGTTCAAGCACAACAGTTTCCTTTGCAATCATCACCAATGCAATCATTTGATAATCCAATCAATTTTGGGCT GCCATCACCATTTCCAGCCTCTGCATTTCCAAATGTATCCAGTAGCACTAGTTTAGGTTTCTCACCTCCTATTGAACCAATTTTTCCCCGTTCTGTGGAA GGGTCCTGTGATTTTATACCTGAAGAACCGGAACTGTTTGAAGACCCATGTTATATTCCTGACCCAATATCATTGCTTGGGCCTGTTTCAGAGTCGCTTG ATAATTTTCAGTTAGACCTGGGAACTGGTTTTGCGCCAGACATGGGACTGGGATTGGAAAGGCCTTATGCTATAAAGAATGTGTCTGCATCTCCTGAAGT GAACAAGCCATCTCCAATTGAGTCCCCTTTGTCAAGACTACGAACTGCTGATGAAAAGAATAATGGTTCTAATTGGTTCCCAACTACTCCTATAGCCCAA GATTTTAACACTCTACCTACGGATGATATGCATGGGAATGAGAAGAGAACATGGCAAATGTGGAACAGTTCACCTCTTGGTCAGGATGGTTTAGGTTTAG TAGGTGGCCCAGGAAGCTGGCTTTTACCCCCAGAACGAAACAGATCAACCAAGGAAGATATTATACCACCTCCATCTCAGAAAACTATGCCATCGCTGTT TACAAAAGATGATCAAATCCTTTCTGGTACTCTTTCTCCCCAGAAGGTTTTTCTTGGCAATGGCCAGAATGGTGGGGTTTTCAGTCCAGTCATTGGTTCA AGTGAAAATGAACCATGGTTACAGAATGCCTTTTTCCCACCATTATCAGGCAGCACTAGCCAGTTCTCTCTGAAATCTCAGGAGGAATGTGCTCAGAATG AAGTGATTTATCGGAGTCCCACTGGAGCTGCAACCGACAATGCTTTGGGGTCATCTCCAGTCCATAGTTGTTCCAAGAATGAATGGGGTGCACAAGGTTC AGGAGAAGGTTTCGGGAAGTCATCTGTCACAAGACCCAATTTTGGTGGTTTGTTCCCCACCTCAGATGTACAGTGGTCATTCGATTAA
AA sequence Show only first row Show all	>Potri.006G107500.2 pacid=42767225 polypeptide=Potri.006G107500.2.p locus=Potri.006G107500 ID=Potri.006G107500.2.v4.1 annot-version=v4.1 MCILCVIQKWSRRVATMLPWLVIPLIGLWALSQLLPPAFRFEITSPRLACVFVLLVTLFWYEVLMPQLSAWRVRRNARLRERKRFEAIELQKLRKTATRK CRNCLSPYKDQNPGAGKFMCSYCGHISKRPVLDLPVPPGLGISNSGIIKDLVGKGGKLLNGKAWSDNGWMCSQEWLDNGGWAGGSVAGKSSYWRKNGSGI FGGDGHCLAETSYSGVVIFACKVLTSFFLSIRWLWRKIFRTSSSEDGSSDAEHRVMLANRRENGENFHESRGEKARRKAEEKRQARLEKELLEEEEKKQR EEVARLVEERRKLRDEIMEAERDRSRSSPLTREKNSRKEAEKKRQERRKEKDKGSSKSNSDAEDLEKKVGKESDQKRDVEKKSEIERRQHQKTGTESVKG QNIELGHGIKNTPGSNFNRGNAGSRYFDRMKGTFLSSSRAFSGGGFFGKPANMPAMVTKENKPNSSIDPVHTSAYRREIYPPDRLAGKASLNGDERNIYR PVLSETQPSQPKKTWQQLFARSSPAPSSSNANVICRPNSKQAEVQAQQFPLQSSPMQSFDNPINFGLPSPFPASAFPNVSSSTSLGFSPPIEPIFPRSVE GSCDFIPEEPELFEDPCYIPDPISLLGPVSESLDNFQLDLGTGFAPDMGLGLERPYAIKNVSASPEVNKPSPIESPLSRLRTADEKNNGSNWFPTTPIAQ DFNTLPTDDMHGNEKRTWQMWNSSPLGQDGLGLVGGPGSWLLPPERNRSTKEDIIPPPSQKTMPSLFTKDDQILSGTLSPQKVFLGNGQNGGVFSPVIGS SENEPWLQNAFFPPLSGSTSQFSLKSQEECAQNEVIYRSPTGAATDNALGSSPVHSCSKNEWGAQGSGEGFGKSSVTRPNFGGLFPTSDVQWSFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51650			unknown protein		Potri.006G107500 [exp]	0	1
AT3G05670			RING/U-box protein (.1)		Potri.013G011400 [exp]	4.00	0.9342
AT5G48610			unknown protein		Potri.017G058701 [exp]	4.47	0.9342
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Potri.017G111400 [exp]	5.00	0.9232
AT1G65280			DNAJ heat shock N-terminal dom...		Potri.019G083700 [exp]	5.65	0.9163
AT1G49520			SWIB complex BAF60b domain-con...		Potri.004G145200 [exp]	5.91	0.9172
AT1G17070			GC-rich sequence DNA-binding f...		Potri.013G076000 [exp]	6.48	0.9181
AT3G51650			unknown protein		Potri.016G133700 [exp]	6.78	0.8922
AT3G25840			Protein kinase superfamily pro...		Potri.008G119100 [exp]	6.92	0.9282
AT1G56290			CwfJ-like family protein (.1)		Potri.001G415900 [exp]	7.21	0.9065
AT5G43490			unknown protein		Potri.017G058500 [exp]	7.74	0.9292

Compare expression of checked genes

Potri.006G107500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.