Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29690 704 / 0 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) AT4G24290 430 / 3e-144 MAC/Perforin domain-containing protein (.1.2) AT1G28380 402 / 3e-133 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 363 / 7e-118 MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G135100 [exp] 1120 / 0 AT1G29690 717 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 711 / 0 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 709 / 0 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 467 / 1e-158 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 428 / 1e-143 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.008G136401 [exp] 416 / 1e-138 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.001G305600 [exp] 414 / 5e-138 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.004G047700 [exp] 414 / 6e-138 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 411 / 8e-137 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025153 [exp] 868 / 0 AT1G29690 595 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 695 / 0 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 681 / 0 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10025235 [exp] 469 / 2e-162 AT1G29690 367 / 8e-123 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10035789 [exp] 454 / 5e-153 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037363 [exp] 405 / 5e-135 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 406 / 9e-135 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 406 / 1e-134 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10041285 [exp] 405 / 2e-134 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 402 / 6e-133 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF01823 [poplar] [flax] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Potri.006G107900.3 pacid=42770596 polypeptide=Potri.006G107900.3.p locus=Potri.006G107900 ID=Potri.006G107900.3.v4.1 annot-version=v4.1 ATGGGGGAGGGTGTAAGTGTTAATGCGGCAGCAATGCACACAGCTATGAACGCTGTGCAAGCACTTGGGAGAGGATTTGATGTGAACTATGATACAAGGT TGTTGTATTGTAAAGGAGTTACTGGGTCTAAAGTGGTGGAGATTGATCAGGAACATGCTAGAGATCTTTTGTTGTGTGGTGGGTTTGTAGTGCCTAATGT TTCTAGGGACATAAAAAACTCTTTGGTCCCAATTGGACGCCAGAGTTCAGGTGTTCGCACTTTTCAAGAGATGGTGGAGTACTTTAATCAAAAGGCCAAC CTATCAGGAGGTCTTCCTCTTGGCTGCTTCAATTCTGCTTTTAGTTTTACTGGTTCAAAGCACATCGATGCTGCAGTTTCAAAGACCCTTTCTATGGATG GATATTATATCCCACTTGCCAAGGTCCAACTTATGAGATCCCCCTTAGTGTTGCATGAAAATGTTAAAAGGGCTGTTCCAACCTGTTGGGATCCTCCATC CTTGGCGAGCTTCATTGAAAATTTTGGGACACACGTTATTACTTCTGTAACTATTGGTGGTAAGGATGTGATATATGTTAAACAACACCAGTCATCGCCT TTGTCAACCCTGGAGATTAAACACTATGTACAGGATATTGGAAATCAGAGGTTTTCTGACATGGAGGGTCATACGAGTTCAGGTCCTATGAAACTCAAGG ATAAGGGTGGTGATTCTGGCATATTTAACAGCCAAGGAATATACCCTCAGCCAACTAGTGCGCCATATCTTACTGGCAAAGAACATGTTACAGTCATTTT CTGCAGGAGGGGAGGAGATGATTTGGAACAAAATCATATTAAATGGGCAAGAACTGTACAGTCATCTCCTGATGTCATTGAGATGAGTTTTGTTCCTATC ACAGATCTCCTTGTTGGGGCACCTGGAAAGGAGCATCTGTGTCGTGCTATTGCTCTATATCTTGAATACAAACCTCAGATAGAAGAGCTCAGATATTTTC TGGAGTTCCAGATTCCTCGAATTTGGGCTCCAGTACAGGACAATTTTCCTGGCCACCAAAGAAAGGAACCTGTTTGCCCATCTTTGCAGTTCAGCATGAT GGGGCAAAAGCTTTATGTCAGTCAGGAGCAGATATCAGTAGGACGCAAGCCTGTCACAGGTTTACGACTATGTATGGAAGGAGCCAAGCAGAATCGCCTG CGTATCCATCTTCAACACTTGGCATCTCTTCCTAAAATCCTTTTGCCATACTGGGACACCCATTTCGCAATTGGTGCTCCCAAGTGGCAGGGACCTGAGG AGCAGGACAGCCGATGGTTTGAACCAGTGAAATGGATGAATTTCTCTCATGTGAGCACTGCTCCAGTTGAGAACCCTGAAACTTTTATTGGTGACCAATC CGGTGTCAATATTGTCACTGGGGCTCAGCTTGGAGTGTGGGATTTTGGTTCAAGAAATGTCTTGTACATGAAACTTTTGTATTCTAGGATACCGGGCTGC ACAATACGAAGATCCTTGTGGGACCACATGCCCAATGACAAGTCAAAGAAATTCCCCGCTGTAAATAATACCAACTCTGGTGACACAAGTTCAGCTTCAA GAGGAAATGTTGCAGGGAACAAGTTGGCTAAGTTTGTTGATATGTCCAAGATGAGAAAAGGGCCTCAAGATCCCCCAGGACATTGGCTAGTTACAGGTGG AAAGCTTGGTGTAGAGAAAGGCAGAATAGCTTTGAGAGTGAAATACTCCTTGCTGAATTATTGA
AA sequence Show only first row Show all	>Potri.006G107900.3 pacid=42770596 polypeptide=Potri.006G107900.3.p locus=Potri.006G107900 ID=Potri.006G107900.3.v4.1 annot-version=v4.1 MGEGVSVNAAAMHTAMNAVQALGRGFDVNYDTRLLYCKGVTGSKVVEIDQEHARDLLLCGGFVVPNVSRDIKNSLVPIGRQSSGVRTFQEMVEYFNQKAN LSGGLPLGCFNSAFSFTGSKHIDAAVSKTLSMDGYYIPLAKVQLMRSPLVLHENVKRAVPTCWDPPSLASFIENFGTHVITSVTIGGKDVIYVKQHQSSP LSTLEIKHYVQDIGNQRFSDMEGHTSSGPMKLKDKGGDSGIFNSQGIYPQPTSAPYLTGKEHVTVIFCRRGGDDLEQNHIKWARTVQSSPDVIEMSFVPI TDLLVGAPGKEHLCRAIALYLEYKPQIEELRYFLEFQIPRIWAPVQDNFPGHQRKEPVCPSLQFSMMGQKLYVSQEQISVGRKPVTGLRLCMEGAKQNRL RIHLQHLASLPKILLPYWDTHFAIGAPKWQGPEEQDSRWFEPVKWMNFSHVSTAPVENPETFIGDQSGVNIVTGAQLGVWDFGSRNVLYMKLLYSRIPGC TIRRSLWDHMPNDKSKKFPAVNNTNSGDTSSASRGNVAGNKLAKFVDMSKMRKGPQDPPGHWLVTGGKLGVEKGRIALRVKYSLLNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29690		CAD1	constitutively activated cell ...		Potri.006G107900 [exp]	0	1
AT3G18170			Glycosyltransferase family 61 ...		Potri.012G051500 [exp]	15.77	0.8305
AT3G48860			unknown protein		Potri.012G105400 [exp]	21.63	0.8031
AT5G01450			RING/U-box superfamily protein...		Potri.001G251900 [exp]	42.76	0.7755
AT4G08330			unknown protein		Potri.014G197000 [exp]	127.43	0.7719
AT3G25290			Auxin-responsive family protei...		Potri.002G249300 [exp]	141.91	0.7601
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124200 [exp]	159.40	0.7367
AT3G28880			Ankyrin repeat family protein ...		Potri.004G129100 [exp]	192.31	0.7543
AT2G36080	B3	ABS2, NGAL1	AP2/B3-like transcriptional fa...		Potri.006G208100 [exp]	208.36	0.7392
AT3G03000			EF hand calcium-binding protei...		Potri.003G095700 [exp]	233.20	0.7316

Compare expression of checked genes

Potri.006G107900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.