Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40610 398 / 5e-142 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G05290 377 / 2e-133 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT1G69530 376 / 3e-133 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G39700 370 / 6e-131 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G03090 369 / 2e-130 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G26770 360 / 8e-127 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT5G56320 358 / 5e-126 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT3G55500 356 / 2e-125 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G37640 353 / 3e-124 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT2G28950 349 / 2e-122 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G135200 [exp] 452 / 3e-163 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.019G057500 [exp] 421 / 6e-151 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.013G154700 [exp] 395 / 6e-141 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.010G202500 [exp] 373 / 5e-132 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.008G057100 [exp] 373 / 6e-132 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.008G088300 [exp] 371 / 2e-131 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 371 / 5e-131 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.009G031800 [exp] 369 / 3e-130 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.001G240900 [exp] 367 / 2e-129 AT2G39700 449 / 6e-162 expansin A4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008603 [exp] 392 / 1e-139 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10034227 [exp] 392 / 2e-139 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10042214 [exp] 390 / 1e-138 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10009917 [exp] 379 / 2e-134 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10029038 [exp] 374 / 2e-132 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10040286 [exp] 369 / 2e-130 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10036763 [exp] 365 / 8e-129 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10023407 [exp] 363 / 8e-128 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10040801 [exp] 362 / 1e-127 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10037164 [exp] 362 / 1e-127 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.006G108000.1 pacid=42766962 polypeptide=Potri.006G108000.1.p locus=Potri.006G108000 ID=Potri.006G108000.1.v4.1 annot-version=v4.1 ATGGCAACTAAAGCAATGCAATTTTCTGTATTCCTTCAGTTATTTCTTGTATTCAGCTTGTTATTTCATGGCACTTGTGGAGACCGTGGTGGCTGGCAGA TTGGTCACGCCACATTCTACGGCGGCAGTGACGCGTCTGGCACAATGGGGGGAGCTTGTGGATATGGAAACCTGTACAGCCAAGGGTATGGAACTAGCAC TGCAGCTCTAAGCACTGCTCTTTTCAATAATGGCTTGAGCTGTGGAGCATGCTTCCAGATACGCTGTAACAATGATCCTAAATGGTGCCATTCCAGTACC ATCACCGTGACAGCTACCAACTTTTGTCCTCCTAATTATGCTTTGGCTAATGACGATGGTGGTTGGTGCAATCCCCCTCTACAACATTTTGATTTGGCGC AGCCAGCTTTCTTGAAAATCGCGCAATATCGAGCTGGGATTGTTCCTGTACTCTTTAGAAGGGTCCCATGTGTGAAGAAAGGAGGCATAAGGTTCACCAT TAATGGTCATTCTTACTTCAACCTGGTCTTGATAACCAATGTGGCTGGTGCAGGGGATGTTCATGCTGTGTCTGTCAAGGGATCTAGAACTGGGTGGCAA ACCATGTCAAGGAATTGGGGCCAAGATTGGCAGAGCAACTCATATCTCAACGGCCAAAGCCTCTCCTTCAGAGTCACAGCAAGTGATGGCACGACTGTTA CCAGCTACAATATTGTGCCTGCGAATTGGCAATTTGGACAAACTTTCGAAGGAGGCCAATTCTAG
AA sequence Show only first row Show all	>Potri.006G108000.1 pacid=42766962 polypeptide=Potri.006G108000.1.p locus=Potri.006G108000 ID=Potri.006G108000.1.v4.1 annot-version=v4.1 MATKAMQFSVFLQLFLVFSLLFHGTCGDRGGWQIGHATFYGGSDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGACFQIRCNNDPKWCHSST ITVTATNFCPPNYALANDDGGWCNPPLQHFDLAQPAFLKIAQYRAGIVPVLFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHAVSVKGSRTGWQ TMSRNWGQDWQSNSYLNGQSLSFRVTASDGTTVTSYNIVPANWQFGQTFEGGQF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.006G108000 [exp]	0	1
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.004G054600 [exp]	4.69	0.9975
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Potri.013G102400 [exp]	6.48	0.9975
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.007G103800 [exp]	8.30	0.9975	GA20ox5
AT4G38770		ATPRP4, PRP4	ARABIDOPSIS THALIANA PROLINE-R...		Potri.009G129900 [exp]	10.19	0.9975	PRP4.4
					Potri.011G073116 [exp]	10.24	0.9975
					Potri.014G075251 [exp]	11.22	0.9975
AT4G33355			Bifunctional inhibitor/lipid-t...		Potri.014G046500 [exp]	12.12	0.9975
AT4G29790			unknown protein		Potri.001G055650 [exp]	12.96	0.9516
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128400 [exp]	13.56	0.9974
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.002G219700 [exp]	14.38	0.9974

Compare expression of checked genes

Potri.006G108000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.