Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08760 573 / 0 ATSIK Protein kinase superfamily protein (.1) AT5G15080 205 / 2e-59 Protein kinase superfamily protein (.1) AT3G55450 198 / 4e-58 PBL1 PBS1-like 1 (.1.2) AT3G28690 198 / 5e-58 Protein kinase superfamily protein (.1.2.3) AT3G01300 199 / 2e-57 Protein kinase superfamily protein (.1) AT5G56460 192 / 2e-55 Protein kinase superfamily protein (.1) AT3G09830 192 / 2e-55 Protein kinase superfamily protein (.1.2) AT5G02290 191 / 2e-55 NAK Protein kinase superfamily protein (.1.2) AT2G28940 193 / 3e-55 Protein kinase superfamily protein (.1.2) AT5G03320 191 / 4e-55 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136400 [exp] 796 / 0 AT3G08760 618 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 214 / 6e-63 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 210 / 1e-61 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.001G240500 [exp] 207 / 1e-60 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G033800 [exp] 204 / 3e-59 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 204 / 3e-59 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 202 / 3e-59 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 203 / 5e-59 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 202 / 5e-59 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022742 [exp] 645 / 0 AT3G08760 578 / 0.0 Protein kinase superfamily protein (.1) Lus10014168 [exp] 639 / 0 AT3G08760 573 / 0.0 Protein kinase superfamily protein (.1) Lus10038087 [exp] 206 / 3e-60 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10030668 [exp] 205 / 2e-59 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 205 / 2e-59 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10006643 [exp] 204 / 2e-59 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10023794 [exp] 192 / 6e-56 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 190 / 1e-54 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 190 / 1e-54 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030796 [exp] 191 / 3e-54 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G108200.1 pacid=42767984 polypeptide=Potri.006G108200.1.p locus=Potri.006G108200 ID=Potri.006G108200.1.v4.1 annot-version=v4.1 ATGGGCTGTTTCACAGTTTTGAAGAGCAAAAAGAAAAGGCCAGAGGCGTCAGTTTCCATCAAGCGTGTTAATCTTAAGGAGCAAATACCAACTACTCTGC CTGAGCCCCAGGTCCAAACTCGGTCATTGCAGTCAGCACCCCCTAGTTTCAGGACCAGAGCGAAGCCTGTTCAACCAGAAATCAAAGTAACTAGCAATAG GGCACGGGCGTTATCAGCTCCAGAAAGCCTTGATGCAGCGGAACAAGATGCTCTTGCATCATCTGAATGTGAAGAGCTTGAAGAGTCAAAAAACCGAGTT GGAAATGCAAAGGAACAACGGCTTCCAGGTCCACAACCCCTTCCACTCCCTTCACCTCAGGGTGGTGCTGTACTGAAGCCTATGAGTAGCTTTAAAGCAG TGAATTGCAGTGGCCCTCTCTATGCTTCTGGACCATTACCGCGTCCTCCAGGTGGAACACTGAGAAACTTTTCATATGAAGAAATTCTATCTGCTTGCCG CAATTTCTCTTCAGATCGATGTGTATCTGAAGGTCTTTCATCCATAATGTTCTGGGCTTCCTTTGGGGATGATGCTTCAAGTTCAAAGAGGTTCGAAGCT AGTGTTACTCGCCTTCATTCATCATCTCAGGGTTTAAAAGAGTTTATAAACGAGGTTAATACCCTTGCATCTTTGCAACATCCAAACTTGTGCAAATTGC TTGGCTATCATGCACGTGATGGGTCTGACCAGAGAATGCTGGTGTATGAGAGGCTTTATCATGGAAGCTTGGATCGGCTGCTGTATGGAAGATCTGATGG GCCTCCCATTGACTGGAACACCAGGATGAAAATTGCCTTATGTGCTGCACAAGGTCTTACTTTTTTGCATGAAGAAGGACCTTTCCAGGCAATGTACAAT GAGTTCTCTACTGCCAACATACAAATCGACAAAGACTTCAGTGCAAAGCTTTCAGGATATGGTTGTGTTGGCCATATTCCTGAAACAGAGATCTCTAACA GTTCAGTGGCTGCAGCAAATCTCTCAGTGGAGACAGTAGAGAGAGGGTTATTGACTCCAAAGAGCAACGTTTGGAGCTTTGCAATTGTTCTTCTTGAACT ACTCACTGGCCGGAAGAATCTTGATAGCCGTCATCCTAGGGAAGAGAGAAACTTAGTTAAGTGGACCCGGCCTTTTCTAGCTGATGACTGTCGACTATCG CTGATTATGGATCCTCAGTTAAAATGCCGTTTCCCAGCAAAAGCAGCCCGGACATTGGCTGACATTGCTCTAAGATGTCTTCAGAAGGATCCATTGGAAA GACTAACCATGAGAACCATTGTTGAGCATCTCAAAGTTATACAAGACATGAAATACTCCAGTCGCTTTCCTCTGCAAGAACCAGCTGCAGTTGCTGGAAA GCAAATGTCCAGATCACCTAGTCTTAATGGAATTATTACCCCAACACCAAGGTTAAGTTTCTCACAATCTCCGCCGTCAAGAGCCCGGCCATCCATTTCC CCGACTAGGCCTCGTGCTTTACCTCTCTCTCTTCCTCCTCGTGCATGTTCCTCAACTCTCTCTCTTGAGGAACTGGAACTGGAACTGGAACGGCAAGAAA GCAGGAAATCATCATCATCAGCTGTTCGAAGGCCAAGTGTTGAAGGATTTTGA
AA sequence Show only first row Show all	>Potri.006G108200.1 pacid=42767984 polypeptide=Potri.006G108200.1.p locus=Potri.006G108200 ID=Potri.006G108200.1.v4.1 annot-version=v4.1 MGCFTVLKSKKKRPEASVSIKRVNLKEQIPTTLPEPQVQTRSLQSAPPSFRTRAKPVQPEIKVTSNRARALSAPESLDAAEQDALASSECEELEESKNRV GNAKEQRLPGPQPLPLPSPQGGAVLKPMSSFKAVNCSGPLYASGPLPRPPGGTLRNFSYEEILSACRNFSSDRCVSEGLSSIMFWASFGDDASSSKRFEA SVTRLHSSSQGLKEFINEVNTLASLQHPNLCKLLGYHARDGSDQRMLVYERLYHGSLDRLLYGRSDGPPIDWNTRMKIALCAAQGLTFLHEEGPFQAMYN EFSTANIQIDKDFSAKLSGYGCVGHIPETEISNSSVAAANLSVETVERGLLTPKSNVWSFAIVLLELLTGRKNLDSRHPREERNLVKWTRPFLADDCRLS LIMDPQLKCRFPAKAARTLADIALRCLQKDPLERLTMRTIVEHLKVIQDMKYSSRFPLQEPAAVAGKQMSRSPSLNGIITPTPRLSFSQSPPSRARPSIS PTRPRALPLSLPPRACSSTLSLEELELELERQESRKSSSSAVRRPSVEGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08760		ATSIK	Protein kinase superfamily pro...		Potri.006G108200 [exp]	0	1
AT2G41690	HSF	AT-HSFB3, HSFB3	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.006G049200 [exp]	2.00	0.7853	Pt-HSFB3.1
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.002G178700 [exp]	6.32	0.8001
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.005G116800 [exp]	8.00	0.7910
AT5G11070			unknown protein		Potri.003G070750 [exp]	10.53	0.7878
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Potri.005G219600 [exp]	10.95	0.7763
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120501 [exp]	14.42	0.7613
AT2G17760			Eukaryotic aspartyl protease f...		Potri.005G108700 [exp]	22.75	0.7488
AT5G46080			Protein kinase superfamily pro...		Potri.004G049200 [exp]	25.45	0.7477
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.010G234100 [exp]	26.49	0.7488	MANS.2
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053100 [exp]	29.17	0.7416

Compare expression of checked genes

Potri.006G108200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.