Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32010 742 / 0 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT2G30470 682 / 0 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT4G21550 179 / 8e-47 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT3G26790 94 / 1e-20 B3 FUS3 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) AT1G13260 80 / 1e-15 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT1G28300 79 / 3e-15 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) AT4G01500 78 / 5e-15 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT2G36080 74 / 6e-15 B3 ABS2, NGAL1 AP2/B3-like transcriptional factor family protein (.1.2) AT3G24650 79 / 8e-15 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) AT2G46870 76 / 1e-14 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136500 [exp] 1618 / 0 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.019G130300 [exp] 909 / 0 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.013G157500 [exp] 902 / 0 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.011G043600 [exp] 540 / 2e-178 AT4G32010 479 / 5e-157 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.004G035300 [exp] 352 / 6e-107 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.017G061200 [exp] 90 / 3e-19 AT3G26790 288 / 8e-97 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.001G322700 [exp] 86 / 9e-18 AT3G26790 279 / 3e-93 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.016G074500 [exp] 81 / 5e-16 AT2G36080 219 / 9e-70 AP2/B3-like transcriptional factor family protein (.1.2) Potri.006G208100 [exp] 81 / 6e-16 AT2G36080 228 / 3e-73 AP2/B3-like transcriptional factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025226 [exp] 1184 / 0 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025142 [exp] 1161 / 0 AT4G32010 794 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10022741 [exp] 918 / 0 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10018440 [exp] 410 / 1e-127 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10014169 [exp] 306 / 5e-92 AT4G21550 237 / 4e-68 VP1/ABI3-like 3 (.1) Lus10011245 [exp] 246 / 3e-67 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10041521 [exp] 94 / 2e-20 AT3G26790 255 / 1e-83 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10012572 [exp] 90 / 3e-19 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10022820 [exp] 80 / 1e-15 AT3G24650 313 / 1e-100 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10015428 [exp] 77 / 5e-15 AT1G28300 163 / 1e-47 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF07496 [poplar] [flax] zf-CW CW-type Zinc Finger
Representative CDS sequence Show only first row Show all	>Potri.006G108300.3 pacid=42769034 polypeptide=Potri.006G108300.3.p locus=Potri.006G108300 ID=Potri.006G108300.3.v4.1 annot-version=v4.1 ATGGCGTCCTCGTCCTCGTCGATTAAGAGTTGCATGAATGCAACTTGTGGAGTCTCAACGTCAAATTCTGGCGGGTGGAGAAAAGGCTGGGCACTGCGAT CTGGTGATTTCGCCATTCTCTGCGATAACTGCGGGTCTGCATATGAGCAATCGATTTTTTGTGAAGTTTTCCACTCAAAGGATTCTGGGTGGAGGGAGTG CACTTCATGCAGCAAGCGTCTCCATTGTGGATGCATTGCTTCCAGGTCCCTGCTTGAGCTACTTGATGGTGGTGGTGTGAACTGTACAAGCTGTTCTAGA ACTTCTGGAGTTGGTCCTATGAATGGTGATGAAAAACCTAATGGATTTGGCAAGCCAAAAGTTGATACCGTTGGGGAACTGCATTCTGCGTCTGCCGACA GCCAGTTGGCAGCTGAAACAAAGCTTATGCAGTTAGGCAATTGTATTGATGGTATAGGCACGAGGAATTTGCTTCAATTACAGAGTGATGAGACAAACGG GTCTTACAGGAAAATGAAACAGGAGGATATACTACCTCCTGTGGGAGAAATTGCAAGCACAATTTTCTCGAATTTTAACCAAGCATCCAATGCATCATGT CAAACTGCCAAACCGGAGATTCATAGAACAGTTACTGCAGCAAAAGATTTATACGAATCACTAGCGCAAACAAACTTGAGTATGAGCCTGGGTTCTTCTT TAGGAAATCCAAATCTCTTTCCTGGAGGTGTTGTTGATGAAAGGGTACCGAGTAAGGCATCCTCTCCACTCCAACAAGGACCCAGGTCTCGCCATCTATT GCCAAAGCCTCCAAAGTCAGCCCTTTCTATGGATGCAAATGCTGGCATGGTCTCACAGATACGCGTTGCTAGGCCACCTGCTGAAGGACGGGGACGGAAT CAGTTGCTTCCTCGTTATTGGCCTAGGATTACAGATCAAGAATTGCAGCAAATATCTGGAGATCCAAATTCCACCATTGTCCCATTGTTTGAAAAGGTTC TCAGTGCGAGCGATGCTGGTCGCATTGGTCGTTTGGTTCTCCCTAAAGCATGTGCTGAAGCTTATTTCCCTCCCATCTCTCAACCTGAGGGTCTTCCTCT ACGGATTCAAGATGTAAAGGGTAAAGAGTGGGTATTTCAGTTCAGATTTTGGCCTAACAATAACAGCAGGATGTATGTCTTGGAGGGTGTAACTCCGTGC ATACAGTCCATGAAATTACAAGCTGGAGATACTGTAACATTTAGTCGTATGGACCCAGAAGGAAAACTTGTCATGGGGTTTAGAAAAGCATCAAACTCTA TAGCAATGCAGGTAAAAACCAGTGTCAGCTTTTATGTTAGCAAACTTGAATATATAGTATTAATGCATAAATTATTAAATAAGCAGGACACCCAACCATC TGCCATTCCTAATGGTGTTCCTTCAAGTGAAAGTTACTTTTCGGGTGTTTTTGAGAACCTGCCTATAATAAGTGGTTACTCTGGCCTTCTTCAGTCACTA AAGGGAAGCACCGACACACACTTAAGTGCATTGTCCAAACATTTGCATTCAGCTAGTGGTGATATTAGCTGGAATAAATCTGAGAAGCAAGAAGACAGGA CAAGGGATGGCTTGCTGCTACCATCATTGATGGTTCCTGAGAGAAAAAGAACACGCAATATTGGGTCTAAAAGTAAGAGGCTACTAATTGATAGCCTAGA TGCTTTTGAGCTGAAACTTACATGGGAAGAGGCACAGGATTTGCTTCGCCCAGCACCAAGTGTCAAGCCTAGTATTGTCACCATCGAGGATCATGATTTT GAAGAATATGAAGAACCTCCAGTTTTTGGGAAGAGGAGTATCTTTATAGTTCGTTCAATTGGGGGGCAAGAGCAATGGGCCCAGTGTGATAGCTGCTCCA AGTGGCGAAGGCTGCCAGTTGATGTTCTTCTTCCACCGAAGTGGACATGTGTGGACAATGCCTGGGATCAAAGCAGGTGTTCTTGTTCTGCTCCAGATGA ATTAGCCCCAAGGGAATTGGAAAATCTTCTCAGACTGAACAAGGATTTCAAGAAACGGAAAATTACTAGCAGTCATCAGCCAGCCCAGGAACTTGAATCT TCTGGTCTGGATGCACTGGCCAATGCTGCAATCCTCGGGGATGTGGGTGAGCAAAGCACTACTGCTGTTGTTGCAACCACAACAAAACACCCTAGACACC GTCCTGGCTGTTCATGCATTGTGTGTATCCAGCCCCCGAGCGGGAAGGGGAAGCACAAGCCTACATGCACATGTAATGTCTGCATGACAGTAAAACGCCG TTTTAAAACTTTAATGATGCGCAAAAAGAAGCGTCAGTCAGAGCGTGAAGCAGAGATTGCCCAGAAGACTCAGCATTTGGTGGGTCCCAAAGATGAAGCT GAAATAGAGAGTAGCTCTAAGCTTGCATCAATACCTAGAGATCCTTCGGATAATGAAGCCAGGTCAGGGAATGAGTTAGAATCCAAAGGCCAAAGCAATA ATCTGTCAAACAAATTGGCTGACTCAGGCAAGGGACATCTAGATTTAAACTGCCATCCTGACCGTGAAGAGGACTCACAAGCAGGGTTATCCCGAATGAG CATGACGAGTTTTCTTCAAGTAGCAACCCTTCCATTGGACACATATTTGAAGCAGAATGGTCTTGCAAGTTTATCTGAGCAACAAGCAAGTTCAGCATCA CATGTCCCACCGCAAACGGGGGAAAATGAAGGGAAAATTAATGATGATTGTCAACCTGCCACGGCTGCACCAGAGCAGGAGAGCGGAGGTGAAGAGAATG ATGAACCCGGACCAGACCAAAGCCAAAATGACCCTGTCTAA
AA sequence Show only first row Show all	>Potri.006G108300.3 pacid=42769034 polypeptide=Potri.006G108300.3.p locus=Potri.006G108300 ID=Potri.006G108300.3.v4.1 annot-version=v4.1 MASSSSSIKSCMNATCGVSTSNSGGWRKGWALRSGDFAILCDNCGSAYEQSIFCEVFHSKDSGWRECTSCSKRLHCGCIASRSLLELLDGGGVNCTSCSR TSGVGPMNGDEKPNGFGKPKVDTVGELHSASADSQLAAETKLMQLGNCIDGIGTRNLLQLQSDETNGSYRKMKQEDILPPVGEIASTIFSNFNQASNASC QTAKPEIHRTVTAAKDLYESLAQTNLSMSLGSSLGNPNLFPGGVVDERVPSKASSPLQQGPRSRHLLPKPPKSALSMDANAGMVSQIRVARPPAEGRGRN QLLPRYWPRITDQELQQISGDPNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPC IQSMKLQAGDTVTFSRMDPEGKLVMGFRKASNSIAMQVKTSVSFYVSKLEYIVLMHKLLNKQDTQPSAIPNGVPSSESYFSGVFENLPIISGYSGLLQSL KGSTDTHLSALSKHLHSASGDISWNKSEKQEDRTRDGLLLPSLMVPERKRTRNIGSKSKRLLIDSLDAFELKLTWEEAQDLLRPAPSVKPSIVTIEDHDF EEYEEPPVFGKRSIFIVRSIGGQEQWAQCDSCSKWRRLPVDVLLPPKWTCVDNAWDQSRCSCSAPDELAPRELENLLRLNKDFKKRKITSSHQPAQELES SGLDALANAAILGDVGEQSTTAVVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKTQHLVGPKDEA EIESSSKLASIPRDPSDNEARSGNELESKGQSNNLSNKLADSGKGHLDLNCHPDREEDSQAGLSRMSMTSFLQVATLPLDTYLKQNGLASLSEQQASSAS HVPPQTGENEGKINDDCQPATAAPEQESGGEENDEPGPDQSQNDPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.006G108300 [exp]	0	1
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.005G215400 [exp]	1.41	0.8653
AT4G01290			unknown protein		Potri.014G089200 [exp]	3.74	0.8013
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155300 [exp]	3.87	0.8205
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.016G136500 [exp]	5.74	0.8313
AT1G22610			C2 calcium/lipid-binding plant...		Potri.013G107700 [exp]	6.70	0.7787
AT5G13250			RING finger protein (.1)		Potri.003G164800 [exp]	9.00	0.7999
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017500 [exp]	10.19	0.7568	GLT1.2
					Potri.010G220800 [exp]	11.61	0.7545
AT5G19390			Rho GTPase activation protein ...		Potri.009G069700 [exp]	13.00	0.7823
AT5G13250			RING finger protein (.1)		Potri.001G062700 [exp]	13.96	0.7319

Compare expression of checked genes

Potri.006G108300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.