Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51580 145 / 5e-40 unknown protein AT1G64385 48 / 5e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136900 [exp] 388 / 1e-134 AT3G51580 171 / 2e-49 unknown protein Potri.019G058400 [exp] 99 / 8e-24 AT3G51580 59 / 7e-10 unknown protein Potri.001G092300 [exp] 72 / 6e-14 AT1G64385 162 / 2e-46 unknown protein Potri.003G139400 [exp] 72 / 7e-14 AT1G64385 189 / 5e-57 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025224 [exp] 230 / 7e-73 AT3G51580 159 / 4e-45 unknown protein Lus10025140 [exp] 224 / 3e-70 AT3G51580 154 / 3e-43 unknown protein Lus10033958 [exp] 66 / 1e-11 AT1G64385 204 / 1e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G108400.1 pacid=42768602 polypeptide=Potri.006G108400.1.p locus=Potri.006G108400 ID=Potri.006G108400.1.v4.1 annot-version=v4.1 ATGGATAGAAATGGGATTTTGAGACTACTTTGGCTGCTCTTCTTGCTTTTTTCTGATGCTTCTAACACTTCTTTTCTTTCCAAGATTCGACAATTGGTTG CTCTCAAAGACGACAGCAACTCCGTCCAAATCCAAGTACCTCCATCGCCAAGTCCAGATCCTGCTAATGCACTGAATACGACAAACACTGAGGAAAATTC TGTTTTGAAAGCTGATAGTTCGACAAGCATTAATAATAGTAGTAGCAGTAATAAAAGTGATAATAATAACACGGGAATTGTGGGTCCAATCTCGATTCCG GGGAATCAAACGGATAGTGAAGCTGAAAAAAATAACGATGAAAAAAAGAAAGTGAGTGAAGAGAAGGATCATCATAAGACGGATTCGGAATCGGAGGTTG GCGGGGAGAATTGTACGAAAGTGGGTATTAAGAGGTGCACGGACCGCAAGTCGATGTCTGCTTGCATTCTTGGGTTTGATAATGAATCCCAAAGGTGGAT TGTTCTTATACAAAATTCCGGGGAACGTGATTTGTCAGTGGATGTGCATGCCCCAAATTCTGTTGACAATTCTTTGGTTGAACTAGGGAAACACCAAACT AAAAAGATCATTTTGACTGTTGGTGAAAACACAGAGGTGATATTAAATGCTAAAAACGGGGAATGTGTTCTACACTTGGATCCTCTTGAATCTCATGGAA ACTTTTTCTTGCACTTCCCATCTTATGACCAGCTAATTACCCCCATCAATGGTGCTTACTTCCTAATTGTTACAGCAGTAGTCTTTGGAGGGACATTCAC TTGCTGCATGTTTAGGAAGAGGAGACGGGAGGCTGGAACTGCTTATCAGGAGCTTGAAATGGCTATGCCAGAATCTGGTGTTGCAAATATTGTCGAAACA GCAGAAGGCTGGGATAATGATTGGGATGATAATTGGGATGAAGAAAATGCAATAAAGTCACCAGCTGCATGTCACTCAGCGAGTGTCTCAGCAAACGGCC TTACCTCTAGGAGTCTAAACAAAGATGGATGGGAAAATGATTGGGATGACTAG
AA sequence Show only first row Show all	>Potri.006G108400.1 pacid=42768602 polypeptide=Potri.006G108400.1.p locus=Potri.006G108400 ID=Potri.006G108400.1.v4.1 annot-version=v4.1 MDRNGILRLLWLLFLLFSDASNTSFLSKIRQLVALKDDSNSVQIQVPPSPSPDPANALNTTNTEENSVLKADSSTSINNSSSSNKSDNNNTGIVGPISIP GNQTDSEAEKNNDEKKKVSEEKDHHKTDSESEVGGENCTKVGIKRCTDRKSMSACILGFDNESQRWIVLIQNSGERDLSVDVHAPNSVDNSLVELGKHQT KKIILTVGENTEVILNAKNGECVLHLDPLESHGNFFLHFPSYDQLITPINGAYFLIVTAVVFGGTFTCCMFRKRRREAGTAYQELEMAMPESGVANIVET AEGWDNDWDDNWDEENAIKSPAACHSASVSANGLTSRSLNKDGWENDWDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51580			unknown protein		Potri.006G108400 [exp]	0	1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.016G086300 [exp]	2.82	0.9160
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	3.00	0.9229
AT2G46710			Rho GTPase activating protein ...		Potri.002G176800 [exp]	7.93	0.9138
AT1G10650			SBP (S-ribonuclease binding pr...		Potri.010G042200 [exp]	9.16	0.9053
AT3G49550			unknown protein		Potri.012G004900 [exp]	9.38	0.9020
AT4G20300			Protein of unknown function (D...		Potri.001G073400 [exp]	10.09	0.8658
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.001G421200 [exp]	10.39	0.9035
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.011G067400 [exp]	10.39	0.9133
AT1G18290			unknown protein		Potri.012G045600 [exp]	10.67	0.9064
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.014G024700 [exp]	11.74	0.8842

Compare expression of checked genes

Potri.006G108400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.