Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01890 1116 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 1110 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G28040 688 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G12460 422 / 4e-133 Leucine-rich repeat protein kinase family protein (.1) AT5G65700 414 / 7e-129 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 409 / 7e-127 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G62950 400 / 8e-125 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G17230 404 / 3e-124 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 403 / 2e-123 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT2G33170 402 / 3e-123 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G137000 [exp] 1635 / 0 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G091000 [exp] 1190 / 0 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 1160 / 0 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G147300 [exp] 709 / 0 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G233600 [exp] 681 / 0 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G117500 [exp] 463 / 1e-148 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G114500 [exp] 453 / 2e-144 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 424 / 2e-132 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 424 / 2e-131 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022738 [exp] 1142 / 0 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10014174 [exp] 1137 / 0 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025223 [exp] 1088 / 0 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 1081 / 0 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 1055 / 0 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 1040 / 0 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035687 [exp] 569 / 0 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10037276 [exp] 568 / 0 AT3G28040 1013 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10006675 [exp] 441 / 3e-140 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027951 [exp] 409 / 7e-127 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G108600.1 pacid=42770657 polypeptide=Potri.006G108600.1.p locus=Potri.006G108600 ID=Potri.006G108600.1.v4.1 annot-version=v4.1 ATGCTACTCAAGTTCTTATTTCTAGTTGGTTTAGCTCCATTACTGGTGGTACAATGTTTGGACTCAACGTTCAATGATGATGTTCTTGGCTTGATAGTAT TCAAGGCAGGTCTTCAAGACCCGGAATCTAAACTCTCATCATGGAATGAAGATGATGATAGTCCTTGTAGCTGGGTTGGTGTTAAATGTGAACCGAATAC CCATCGGGTTACTGAACTGTTTCTTGATGGCTTCTCTTTATCTGGGCACATTGGTCGTGGCCTTCTAAGGCTACAGTTTCTTCAGGTTCTTTCTTTAGCT AATAATAAATTCAACGGGACTATAAACCCTGATCTTCCTAGACTTGGGGGTTTACAAGTTATTGACTTGAGTGATAATAGCCTATCAGGGTCAATCCCTG ATGGGTTTTTTCAACAATGTGGGTCGTTGAGGTCTGTTTCGTTTGCTAGGAATGATCTTACAGGGATGATTCCTGGTTCTTTGAGCTCTTGTATGACGCT TTCATTGGTTAACTTCTCGTCGAATGGCCTTTGTGGTGAATTGCCATCTGGATTATGGTATTTGAGAGGGCTACAGTCTCTTGATCTATCTGATAACTTG TTGGAAGGAGAGATTCCTGAAGAAATTGCAAATTTGTATGATTTAAGAGTCATTAATTTGAAAAATAATAGGTTCACTGGGCAGCTACCAGTGGATATTG GAGGCTCTCAGGTTTTGAAACTGCTTGATTTTAGTGAGAATTCTTTGTCTGGTAGTCTTCCAGAGTCATTGCGGAGGCTCAGTTCATGTGCTACGGTTAG ACTAGGAGGAAATTCATTCACTGGGGAAGTTCCTGGATGGATTGGAGAGTTGACAGATCTTGAAAGTTTGGATCTTTCTGCCAATAGGTTTTCAGGCCGG ATTCCTGTTTCAATAGGAAACCTTAATGTCTTGAAGGAATTGAATCTGTCCATGAACCAGCTTACTGGAGGGTTACCTGAGTCGATGATGAATTGCCTAA ACCTTTTGGCTATAGATGTTAGCCATAATCGGTTGACAGGTAATCTTCCTTCGTGGATTTTCAAGTCGGGGTTAAATAGAGTGTCACCTTCGGGCAACAG ATTCGATGAGAGCAAACAACATCCTTCAGGTGTATCGTTGGCGGTCTCTATTCAAGGTCTTCAGGTCTTGGATCTATCTTCAAATGTCTTCTCCGGAGAA ATTCCATCTGACATTGGGGTTTTAAGCAGCTTGCTACTCTTGAATGTATCAAGGAACCAACTATTTGGTTCGATTCCATCGAGCATAGGAGATTTAACAA TGATTCGAGCTCTGGATTTGAGTGATAATAGGCTAAATGGAAGCATTCCTTCTGAAATTGGAGGAGCAATTTCACTCACGGAACTGCGACTGGAGAAGAA CTTACTAACTGGGAAAATTCCCACTCAAATCAAGAAGTGCTCATCTTTAGCATCTTTAATTCTATCTTGGAACAACCTTACTGGTCCAATACCAGTAGCC GTTGCAAACCTAATCAACCTTCAATATGTAGACTTATCTTTCAACCGTCTCTCTGGAAGCTTACCCAAAGAGCTGACTAATCTTTCCCATCTCCTATCCT TCAATATTTCCCATAACAACCTCCAAGGTGACCTCCCACTCGGGGGTTTCTTCAACACAGTTTCCCCCTCATCTGTCTCTGGTAATCCATCCCTGTGTGG CTCTGTTGTCAACCTATCCTGCCCTTCTGACCATCAGAAGCCTATTGTTCTGAATCCCAACTCTTCTGACTCCTCCAATGGCACCTCTTTAGATCGCCAT CACAAGATTGTTCTCAGCATCTCTGCCCTCATTGCTATTGGTGCAGCCGCTTGCATCACCCTTGGTGTGGTAGCTGTTATTTTCCTCAATATTCATGCAC AATCTTCTATGGCACGTTCTCCTGCTGCATTCGCATTTTCTGGCGGGGAAGATTTCAGCTGTTCCCCAACTAATGATCCGAACTATGGCAAGCTTGTCAT GTTTTCTGGTGATGCTGATTTTGTTGCTGGGGCCCGTGCATTACTCAACAAAGACTCAGAACTTGGTCGCGGTGGATTCGGAGTTGTTTACCGAACAATA CTTCGAGATGGGCGTTCAGTTGCTATAAAGAAGCTAACAGTTTCAAGTTTGATCAAGTCTCAAGATGAATTTGAAAGGGAAGTGAAGGAACTTGGAAAGG TTAGACATCATAATCTTGTCGCCCTGGAAGGTTATTACTGGACTCCAACCTTGCAACTCCTTATTTATGAATATGTATCAAGTGGAAGTTTGTATAAGCA TCTCCATGATGGGCCTGATAAGAAGTACCTCTCCTGGCGACATAGATTCAACATAATTCTTGGAATGGCTAGAGCTTTGGCCCATTTGCATCACATGAAC ATAGTTCACTATAATTTAAAATCTACCAATATTCTAATAGATGATTCTGGTGAGCCAAAGGTGGGAGATTTTGGCCTGGCAAAGCTGTTGCCTACATTAG ACCGTTGCATCTTAAGCAGCAAAATCCAGAGTGCGCTAGGATACATGGCTCCTGAGTTTGCTTGTCGAACTGTGAAGATAACTGAGAAATGTGATGTGTA TGGGTTTGGGATCTTAGTTTTGGAGGTGGTGACAGGGAAGAGACCAGTGGAATATATGGAGGATGATGTGGTTGTGCTATGTGACATGGTGAGGGGAGCA CTAGAGGATGGCAGAGTGGAAGAATGCATTGATGGCAAACTTGGAGGAAAAGTTCCAGCAGACGAGGCAATTCCTGTGATAAAACTTGGTTTGATATGTG CGTCTCAAGTACCATCGAATCGGCCAGACATGGAAGAAGTGGTTAATATTTTAGAGCTGATCCAATGTCCTGCAGAGGGTCATGAAGAGTTGGAGTGA
AA sequence Show only first row Show all	>Potri.006G108600.1 pacid=42770657 polypeptide=Potri.006G108600.1.p locus=Potri.006G108600 ID=Potri.006G108600.1.v4.1 annot-version=v4.1 MLLKFLFLVGLAPLLVVQCLDSTFNDDVLGLIVFKAGLQDPESKLSSWNEDDDSPCSWVGVKCEPNTHRVTELFLDGFSLSGHIGRGLLRLQFLQVLSLA NNKFNGTINPDLPRLGGLQVIDLSDNSLSGSIPDGFFQQCGSLRSVSFARNDLTGMIPGSLSSCMTLSLVNFSSNGLCGELPSGLWYLRGLQSLDLSDNL LEGEIPEEIANLYDLRVINLKNNRFTGQLPVDIGGSQVLKLLDFSENSLSGSLPESLRRLSSCATVRLGGNSFTGEVPGWIGELTDLESLDLSANRFSGR IPVSIGNLNVLKELNLSMNQLTGGLPESMMNCLNLLAIDVSHNRLTGNLPSWIFKSGLNRVSPSGNRFDESKQHPSGVSLAVSIQGLQVLDLSSNVFSGE IPSDIGVLSSLLLLNVSRNQLFGSIPSSIGDLTMIRALDLSDNRLNGSIPSEIGGAISLTELRLEKNLLTGKIPTQIKKCSSLASLILSWNNLTGPIPVA VANLINLQYVDLSFNRLSGSLPKELTNLSHLLSFNISHNNLQGDLPLGGFFNTVSPSSVSGNPSLCGSVVNLSCPSDHQKPIVLNPNSSDSSNGTSLDRH HKIVLSISALIAIGAAACITLGVVAVIFLNIHAQSSMARSPAAFAFSGGEDFSCSPTNDPNYGKLVMFSGDADFVAGARALLNKDSELGRGGFGVVYRTI LRDGRSVAIKKLTVSSLIKSQDEFEREVKELGKVRHHNLVALEGYYWTPTLQLLIYEYVSSGSLYKHLHDGPDKKYLSWRHRFNIILGMARALAHLHHMN IVHYNLKSTNILIDDSGEPKVGDFGLAKLLPTLDRCILSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGA LEDGRVEECIDGKLGGKVPADEAIPVIKLGLICASQVPSNRPDMEEVVNILELIQCPAEGHEELE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	0	1
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G001000 [exp]	1.00	0.9599
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.008G151800 [exp]	1.73	0.9501
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	3.16	0.9538
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.015G104700 [exp]	3.74	0.9345
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	4.24	0.9325
AT3G54290			unknown protein		Potri.008G019700 [exp]	4.35	0.9219
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	4.89	0.9491
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.001G126100 [exp]	6.00	0.9392
AT5G63940			Protein kinase protein with ad...		Potri.005G067000 [exp]	6.08	0.9121
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	8.36	0.9303

Compare expression of checked genes

Potri.006G108600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.