Plant FIBer expression Database

Potri.006G108700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G38550 275 / 7e-91 Transmembrane proteins 14C (.1)
AT3G57280 75 / 1e-15 Transmembrane proteins 14C (.1)
AT3G20510 56 / 9e-10 Transmembrane proteins 14C (.1)
AT1G50740 50 / 9e-08 Transmembrane proteins 14C (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G137200
[exp]
495 / 1e-177 AT2G38550 263 / 4e-86 Transmembrane proteins 14C (.1)
Potri.001G139800
[exp]
63 / 2e-11 AT3G57280 172 / 5e-54 Transmembrane proteins 14C (.1)
Potri.003G094300
[exp]
62 / 4e-11 AT3G57280 214 / 3e-70 Transmembrane proteins 14C (.1)
Potri.001G424000
[exp]
48 / 7e-07 AT1G50740 158 / 2e-51 Transmembrane proteins 14C (.1)
Potri.011G138100
[exp]
42 / 6e-05 AT1G50740 128 / 1e-39 Transmembrane proteins 14C (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025137
[exp]
220 / 5e-70 AT2G38550 207 / 5e-65 Transmembrane proteins 14C (.1)
Lus10025221
[exp]
204 / 9e-64 AT2G38550 203 / 2e-63 Transmembrane proteins 14C (.1)
Lus10019624
[exp]
57 / 3e-10 AT1G50740 177 / 8e-59 Transmembrane proteins 14C (.1)
Lus10008541
[exp]
52 / 2e-08 AT1G50740 178 / 3e-59 Transmembrane proteins 14C (.1)
Lus10031047
[exp]
51 / 7e-07 AT3G57280 132 / 6e-37 Transmembrane proteins 14C (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03647 Tmemb_14 Transmembrane proteins 14C
Representative CDS sequence
>Potri.006G108700.4 pacid=42767755 polypeptide=Potri.006G108700.4.p locus=Potri.006G108700 ID=Potri.006G108700.4.v4.1 annot-version=v4.1
ATGAGTGTGTCAATGGAGTTGTTATCTGCTGGCTGTAGTACTTTGCCCTTGAAAAGACCCCCTGTCTGTTCATCTTCTTCAATGGCTTTGTTAGCTCCAT
CTTTAAAGTTCAAATCTTTATTGCTTAAACCTAGTGGTCACAGATTGTCTTTTGAATCTTCAAGGGCTTTTGTCCCAAAAGGGCTTAGTGTTGGTTTTCA
TTCTGGGAATTCGTTGAATCGACCAATCGTGGCATTTGCTGCCTCTCACGAGGATTCTCATTCAAAGATTGAAGTGGAAAAGGAAAGCGAAGATAGAAAA
TTAGGGGGCGAAGAATCAGAGGAAGTATGGAAACAGACACTGGAGTCATTCAAAGAACAAGCTTTGAAGTTGCAAAGTGTTTCACAAGAAGCATATGAGA
TCTACTCAAAGAAAACCATGGTTGTTTTGCAAGAAACTTCAGAGAAGTTAAAAATTCAAGCAGAGAAGGCAAAGAGTGATTTGGGCGAGCTAGCAAAGGA
ATTTGGTGAAGATGGTATACAGTTACTCACGGTGGCTACAGAGAATTCTCCAGAATCAGTGAAGGAGGTTGTTGAAACATTAACTTCCTCGACTGATAAT
TTGAACGATGTTTCTAAAGTCCGCGATTTCCATCTTGGAATACCATATGGTTTATTACTTTCTACTGCTGGATTTCTCTCATTCATGTTGTCCGGAAGCA
TCTCTTCCCTTAGGTTTGGCGTCATTCTTGGCGGCATGCTTCTGGCTTTAAGTGTATCAAGTTTAAAATCTTACAAAAGAGCAGAGCCATATTCCTTAGC
CTTGAAAGGACAGGCAGCAATAGCAGCTATCATCTTTCTTCGGGACATTAGCATCATACTGACTCGGAGAACTTCATTTCTTACTCCTCTTGCAACCCTC
ATCAGTGGTGCAATGGCTGCATTCTATCTATATAAGATTGCCTTGGATGGTAAGCAGAGTAAAGGGTCAGACTTGGGACACGGAGCAGAAGGTTGA
AA sequence
>Potri.006G108700.4 pacid=42767755 polypeptide=Potri.006G108700.4.p locus=Potri.006G108700 ID=Potri.006G108700.4.v4.1 annot-version=v4.1
MSVSMELLSAGCSTLPLKRPPVCSSSSMALLAPSLKFKSLLLKPSGHRLSFESSRAFVPKGLSVGFHSGNSLNRPIVAFAASHEDSHSKIEVEKESEDRK
LGGEESEEVWKQTLESFKEQALKLQSVSQEAYEIYSKKTMVVLQETSEKLKIQAEKAKSDLGELAKEFGEDGIQLLTVATENSPESVKEVVETLTSSTDN
LNDVSKVRDFHLGIPYGLLLSTAGFLSFMLSGSISSLRFGVILGGMLLALSVSSLKSYKRAEPYSLALKGQAAIAAIIFLRDISIILTRRTSFLTPLATL
ISGAMAAFYLYKIALDGKQSKGSDLGHGAEG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G38550 Transmembrane proteins 14C (.1... Potri.006G108700
[exp]
0 1
AT5G20260 Exostosin family protein (.1) Potri.006G064900
[exp]
2.00 0.8314
AT3G07030 Alba DNA/RNA-binding protein (... Potri.002G240601
[exp]
2.82 0.7790
AT3G53270 Small nuclear RNA activating c... Potri.006G065800
[exp]
3.87 0.7978
AT3G10250 Plant protein 1589 of unknown ... Potri.016G038100
[exp]
6.48 0.8053
Potri.013G037900
[exp]
6.63 0.8022
AT4G39100 SHL1 short life, PHD finger family ... Potri.009G121000
[exp]
7.61 0.8065 SHL1.1
AT3G49800 BSD domain-containing protein ... Potri.007G006400
[exp]
10.19 0.7691
AT2G25490 FBL6, EBF1 EIN3-binding F box protein 1 (... Potri.018G027700
[exp]
10.58 0.7623
AT2G33550 Trihelix Homeodomain-like superfamily p... Potri.001G066900
[exp]
10.90 0.7799
AT4G39870 TLD-domain containing nucleola... Potri.005G075800
[exp]
12.36 0.7575

Potri.006G108700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.