Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04930 1321 / 0 ALA1 aminophospholipid ATPase 1 (.1) AT3G27870 717 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 711 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G17500 710 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 707 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 706 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 702 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 698 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT3G13900 694 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 677 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138000 [exp] 2382 / 0 AT5G04930 861 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014600 [exp] 1344 / 0 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.010G246200 [exp] 1328 / 0 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014400 [exp] 1321 / 0 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.010G039900 [exp] 712 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 709 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.003G043300 [exp] 700 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 696 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 691 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028873 [exp] 1319 / 0 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028875 [exp] 1302 / 0 AT5G04930 1694 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008947 [exp] 1301 / 0 AT5G04930 1644 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008945 [exp] 1300 / 0 AT5G04930 1681 / 0.0 aminophospholipid ATPase 1 (.1) Lus10033406 [exp] 1296 / 0 AT5G04930 1704 / 0.0 aminophospholipid ATPase 1 (.1) Lus10034872 [exp] 1292 / 0 AT5G04930 1712 / 0.0 aminophospholipid ATPase 1 (.1) Lus10006881 [exp] 707 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 706 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1) Lus10022238 [exp] 705 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 699 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF16209 [poplar] [flax] PhoLip_ATPase_N Phospholipid-translocating ATPase N-terminal CL0137 [poplar] [flax] PF16212 [poplar] [flax] PhoLip_ATPase_C Phospholipid-translocating P-type ATPase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.006G109200.3 pacid=42769779 polypeptide=Potri.006G109200.3.p locus=Potri.006G109200 ID=Potri.006G109200.3.v4.1 annot-version=v4.1 ATGACTTCTGGCTGGCCACTGCTTTTATCTTTGGATAATTCTCCTGTATCGGAGCAGCCATTGCCTCATCATTCTGGTAGTTTTAGTGCTTTGGGGGTGT CACGCCGGGATTGTTCTTTCAATACTTCTATCCTCCATCTTGCTCAAGGAGAGCCATTTGAGGTAGATTGTTCAGAGAAGGACGAAGGCAGGGCACACTT TTTTGGTGATACTAGATTCCGTAGTGTGAATCCAGTTGGAGAAAGTTTTGATTTGGTTGTGAATACAAAGAGGCTCTATTCTCTCAAGTCTGAGTTCTTT GAGGAAGTTCCATTGGAATGCCCCAAACAACGGAGCAAACACCTTGTATGGTGGGGTGCAACTGCTAGTGAAATGCTACATAACAACAATAACACAACCT TTTCAACTGGCTTTGAGATTTCCAGGGACTGTGGTAACTTGGGCAAGCCTAAGGGGAGGAGCCGCAGGAGAAGTGTGCAATTTGATGATGTGTTGCGCGA AGAAGATGCTCGGTTCATCTACATTAATGATCCGAGGAGAACCAATGACCAGTATGAATTCACAGGCAATGAGATCCGAACCAGCAAGTATACCTTGATC ACCTTCTTGCCGAAGAATATTTTCATTCAGTTCCATCGGGTTGCATATTTGTATTTCCTGGCTATTGCTGCTCTCAATCAACTTCCTCCTCTTGCAGTTT TTGGGAGAACAGTGTCCCTATTCCCTCTCTTGTTTGTTCTTTGTGTCACGGCGATCAAAGATGGATACGAGGATTGGAGAAGGCACAGATCAGATCGCAA TGAGAATAACCGAGAGGCTCTAGTTCTGCAATGTGGTCAGTTTAGATCGAAGAAATGGAAAAAGATACGAGCTGGTGAAGTTGTGAAGATCTGCACTGAT GAGACAATTCCTTGTGACATGGTTTTGTTAGGGACAAGTGATCCTAGTGGTGTTGCTTACATACAAACAATGAATTTAGATGGCGAGTCGAACTTGAAGA CTAGGTATGCGAGGCAGGAAACGTCCTTAGCAGTATTGGAAGGTGGTGCAATTTCAGGGCTTATAAGATGCGAGCAACCCAATAGGAATATTTACGAGTT CACAGCCAACATGGAGTTCAATGGGCAAAAGTTTTCCCTTAGCCAATCTAACATTGTATTGCGTGGATGTCAGCTGAAGAACACTGGTTGGATAATAGGT GTTGTGGTGTATGCTGGCCAGGAAACAAAAGCAATGTTGAATAGTGCAGCTTCTCCTTCCAAAAGAAGCAAACTGGAAATTTACATGAATCGGGAGACAC TATGGTTGTCTATTTTTCTGTTCATAATGTGTCTGGTTGTTGCAGTGGGAATGGGTCTCTGGCTTGCACGATATGAGGACCAGCTTGATTATTTACCTTA TTACAGAAAGAGATACTTCACGCCCGGGAAGGATTATGGGAAAAGATACAAATTTTATGGGATTCCTATGGAGATTTTTTTCTCATTTTTGAGCTCTATC ATAGTGTTTCAGATAATGATTCCCATTTCTCTTTATATTACAATGGAGCTGGTTCGTATAGGGCAGTCCTATTTCATGATTGGAGACAGGCACATGTTTG ATAGTAGTTCTGGCTCAAGGTTTCAGTGCAGATCCTTGAACATAAATGAGGATCTGGGTCAGATACGCTATGTTTTTTCAGACAAGACAGGGACACTTAC TGAGAACAAAATGGAATTTCGAAGAGCAAGTGTAAATGGGAAAAGTTATGGAGGCTCCTCGCTAACTGCTGAGCAATTGCTGGAAGAGAACATTTCAGCT GCAACTACACAAAAGAGATGGAAACTTAAATCTACTATTACTGTTGATTCTGAGCTCTTGAAATTGCTGCACAAAGACTTAGTTGGAGATGAAAGAATTG TTGCACATGAATTTTTCCTTGCACTAGCTGCATGCAACACCGTGATCCCAGTCCGTACTCATGATGGATTTTCTAGTTGCACAGACAGTCAAATTTTTGA GGATGTAGAAACTATTGACTATCAGGGTGAATCTCCTGATGAGCAAGCTTTAGTTGCTGCTGCCTCTGCTTATGGTTATACTCTCTTCGAGCGAACATCT GGACATATAGTAATTGATGTTAATGGTGAGAAACTAAGGTTGGGTGTTTTGGGCATGCATGAATTCGATAGCGTGCGGAAACGAATGTCTGTTGTAATCA GATATCCTAATGATGCTGTAAAAGTGCTGGTCAAAGGTGCTGATTCTTCAGTGTTGAGTATTTTAGCAAAAGACTTAGGGAAGGATGATCATGCAAGGCG TTCAGCAACATACAGTCATTTGACGGAATATTCATCACAAGGTTTGCGCACACTTGTGATTGCTGCCAGGGATCTTACAGAGGAAGAACTTGAGCTGTGG CAATGCAGGTTTGATGATGCAAGCACTTCTTTGACTGATAGAGCAGCAAGGCTACGCCAAACAGCAGCTCTCATAGAGTGCGACTTGAATTTACTTGGTG CAACTGCAATTGAAGACAAGCTACAAGAAGGTGTGCCGGAAGCCATTGAGTCCCTACGGCAAGCAGGGATCAAGGTCTGGGTTCTGACTGGTGATAAGCA AGAGACGGCAATGTCTATTGGCCTCTCTTGCAAACTCCTGACACCAGATATGGAGCAAATTATTATAAACGGCAATTCAGAGAATGACTGCAGAAAACTT TTGTCTGATGCTAAGGCCAAGTGTGGTTTAAATTTATCAAACAAAGGAAGCCAATATTTGAAATGCAATGCTGAAATGGACTACCTTCAGAGGCCAGAAA GGAAGGAGGAAGTGCCACTAGCTCTCATAATTGACGGGAACAGTTTGGTATACATTTTGGAAAAAGAACTCGAGTCAGAGCTTTTTGACATCGCAACTTA TTGTAAGGTTGTGCTTTGCTGTCGTGTTGCACCATTACAGAAGGCAGGGATTGTTGATCTAATCAAGAGCCGATCTGATGATATGACATTGGCTATTGGT GATGGAGCTAATGATGTTTCAATGATCCAAATGGCGGATGTTGGTGTTGGAATATGTGGTCAGGAAGGGCGTCAAGCAGTTATGGCATCAGATTTTGCTA TGGGACAGTTTCGGTTCCTGAAAAGACTACTTTTGGTACATGGACACTGGAATTATCAACGCATTGGTTATTTGATTCTCTACAACTTCTACCGCAATGC TGTTTTTGTATTGATGTTATTCTGGTATATATTGTTCACAGCTTTTTCAACAACGTCAGCATTGACAGATTGGAGCAGTGTTCTTTATTCTGTTATCTAT ACTTCTGTGCCTACCATTGTTGTTGGTATTCTGGACAAGGACTTAAGCCATCGGACACTGTTACAGTATCCAAAACTTTATGGTGTGGGGTATAGACACG AGGCTTACAATATACACCTATTCTGGGTCATGATGGCTGATACACTATGGCAGAGTCTTGTTCTCTTTGGCATACCCATCTTCATTTATAAGGAAAGCAC AATTGATATATGGAGCATAGGCAATTTGTGGACAGTAGCAGTTGTTATCCTTGTCAATATACACCTGGCAATGGATGTTCAACGTTGGGTTTCTATTACT CATCTTGCTGTTTGGGGATCAGTGATCGTTGCATTTGCTTGTGTGGTAGTATTGGATTCTATACCTATCTTCCCTAATTATGGGACCATTTACCATCTGA CAAAGTTGCCTACCTATTGGCTCACCATTTTTCTCATAATAGTTAGTGCATTGCTCCCTCGTTTTCTATTGAAGCTTGTACATCATCATTTTTGGCCATC AGACATTCAGATAGCAAGAGAAGCTGAGATACTGGGAAGAGGACCTGATTATTGGGGATCAAAACCTGTTGGAAGTTCCAGCTGA
AA sequence Show only first row Show all	>Potri.006G109200.3 pacid=42769779 polypeptide=Potri.006G109200.3.p locus=Potri.006G109200 ID=Potri.006G109200.3.v4.1 annot-version=v4.1 MTSGWPLLLSLDNSPVSEQPLPHHSGSFSALGVSRRDCSFNTSILHLAQGEPFEVDCSEKDEGRAHFFGDTRFRSVNPVGESFDLVVNTKRLYSLKSEFF EEVPLECPKQRSKHLVWWGATASEMLHNNNNTTFSTGFEISRDCGNLGKPKGRSRRRSVQFDDVLREEDARFIYINDPRRTNDQYEFTGNEIRTSKYTLI TFLPKNIFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNREALVLQCGQFRSKKWKKIRAGEVVKICTD ETIPCDMVLLGTSDPSGVAYIQTMNLDGESNLKTRYARQETSLAVLEGGAISGLIRCEQPNRNIYEFTANMEFNGQKFSLSQSNIVLRGCQLKNTGWIIG VVVYAGQETKAMLNSAASPSKRSKLEIYMNRETLWLSIFLFIMCLVVAVGMGLWLARYEDQLDYLPYYRKRYFTPGKDYGKRYKFYGIPMEIFFSFLSSI IVFQIMIPISLYITMELVRIGQSYFMIGDRHMFDSSSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRRASVNGKSYGGSSLTAEQLLEENISA ATTQKRWKLKSTITVDSELLKLLHKDLVGDERIVAHEFFLALAACNTVIPVRTHDGFSSCTDSQIFEDVETIDYQGESPDEQALVAAASAYGYTLFERTS GHIVIDVNGEKLRLGVLGMHEFDSVRKRMSVVIRYPNDAVKVLVKGADSSVLSILAKDLGKDDHARRSATYSHLTEYSSQGLRTLVIAARDLTEEELELW QCRFDDASTSLTDRAARLRQTAALIECDLNLLGATAIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAMSIGLSCKLLTPDMEQIIINGNSENDCRKL LSDAKAKCGLNLSNKGSQYLKCNAEMDYLQRPERKEEVPLALIIDGNSLVYILEKELESELFDIATYCKVVLCCRVAPLQKAGIVDLIKSRSDDMTLAIG DGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRIGYLILYNFYRNAVFVLMLFWYILFTAFSTTSALTDWSSVLYSVIY TSVPTIVVGILDKDLSHRTLLQYPKLYGVGYRHEAYNIHLFWVMMADTLWQSLVLFGIPIFIYKESTIDIWSIGNLWTVAVVILVNIHLAMDVQRWVSIT HLAVWGSVIVAFACVVVLDSIPIFPNYGTIYHLTKLPTYWLTIFLIIVSALLPRFLLKLVHHHFWPSDIQIAREAEILGRGPDYWGSKPVGSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.006G109200 [exp]	0	1
AT3G14172			unknown protein		Potri.003G070400 [exp]	6.00	0.8908
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060000 [exp]	6.32	0.8890
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.004G047000 [exp]	7.61	0.8582
AT4G16970			Protein kinase superfamily pro...		Potri.003G082600 [exp]	8.12	0.8543
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.006G154700 [exp]	10.09	0.8541
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.002G019400 [exp]	11.83	0.8719
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.001G398900 [exp]	12.00	0.8902
					Potri.013G034600 [exp]	15.81	0.8189
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Potri.009G011400 [exp]	16.24	0.8630
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Potri.013G044100 [exp]	16.52	0.7909	Pt-EIN4.3

Compare expression of checked genes

Potri.006G109200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.