Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38560 393 / 2e-136 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1) AT2G42730 134 / 2e-34 F-box family protein (.1.2) AT4G18720 125 / 2e-33 Transcription factor IIS protein (.1) AT5G42325 99 / 3e-24 Transcription factor IIS protein (.1) AT2G13640 67 / 4e-12 Transcription factor IIS family protein (.1) AT2G25640 64 / 5e-11 SPOC domain / Transcription elongation factor S-II protein (.1) AT5G27310 63 / 6e-11 Transcription factor IIS family protein (.1) AT5G25520 64 / 9e-11 SPOC domain / Transcription elongation factor S-II protein (.1.2) AT2G27780 59 / 1e-09 Transcription factor IIS family protein (.1) AT5G11430 56 / 3e-08 SPOC domain / Transcription elongation factor S-II protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138100 [exp] 605 / 0 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.018G034500 [exp] 67 / 8e-12 AT5G25520 513 / 1e-164 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.006G246800 [exp] 65 / 4e-11 AT5G25520 536 / 1e-173 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.016G033300 [exp] 44 / 0.0002 AT5G05140 415 / 3e-142 Transcription elongation factor (TFIIS) family protein (.1) Potri.006G035500 [exp] 43 / 0.0002 AT5G05140 309 / 6e-101 Transcription elongation factor (TFIIS) family protein (.1) Potri.012G015900 [exp] 39 / 0.0005 AT4G07950 124 / 5e-38 DNA-directed RNA polymerase, subunit M, archaeal (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014178 [exp] 426 / 2e-149 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025215 [exp] 425 / 3e-149 AT2G38560 384 / 8e-133 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10022735 [exp] 416 / 8e-146 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025131 [exp] 410 / 2e-143 AT2G38560 387 / 6e-134 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10034247 [exp] 288 / 3e-96 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029016 [exp] 129 / 6e-36 AT2G38560 131 / 1e-36 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029017 [exp] 76 / 1e-16 AT2G38560 70 / 1e-14 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10008108 [exp] 62 / 3e-10 AT5G11430 559 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10013146 [exp] 60 / 1e-09 AT5G11430 550 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10039000 [exp] 42 / 0.0004 AT5G05140 382 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF01096 [poplar] [flax] TFIIS_C Transcription factor S-II (TFIIS) CL0167 [poplar] [flax] PF07500 [poplar] [flax] TFIIS_M Transcription factor S-II (TFIIS), central domain CL0167 [poplar] [flax] PF08711 [poplar] [flax] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Potri.006G109300.3 pacid=42767732 polypeptide=Potri.006G109300.3.p locus=Potri.006G109300 ID=Potri.006G109300.3.v4.1 annot-version=v4.1 ATGGAGATGGAGTTTGTGGAGTTATTTGATGAAGCAAAGAAAGCTGCAGATGCTTCTCTCAATGATGACGTATGGTCTAGTGGACCGGAGGTGACTCGGT GTGTTGATTCGCTGAAACAGCTCAGGAAGTTTAAAGTTACTAGTGAACTTCTTGTTTCTACTCAGGTTGGGAAAAAACTTCGACCTCTTGCAAAGCATCC TAAGGAGAAAATCCGAGCTGTGGCCTCTGACTTGCTTGAGATGTGGAAAAAGATGGTCATTGATGAGACGAGAAAAAAAAATGGCAGCATTGACAGTAAA AGTTCAGTAAAAGCTGAGGTATCAAAATCGGAGACTGTCAAAGTTGAGAAGCTTCGAAAGACTAGTGTGGTAAAGGTTGAAAAGGCTTCAACCTCAGAAA CTGTTAAAGTTGAGAAAATGGATCAGGATAAGACTGTCAAGGTTGAGAAGATGAGCAAGCAGGAAATCCAGACTTCCAGTGTGAAGCAACCATCACAATC ACCTATTGGTCCACCAAAGCTGAAGACACTGGTTAAATGTAATGATGCTTTACGCGACAAAATCCGCGAACTTCTTGCAGAGGCCTTGTCCAAAGTTGCC AGCGAGGCTGATGAGGACATCAGGGATGAAGTAGAAGCATGTGACCCTATTCGAGTTGCTGTGTCTGTAGAATCCATGATGTTTGAAAAACTCGGTCGGT CAAATGGAGCACAAAAATTGAAGTACAGATCTATAATGTTCAATATCAAGGACCAAAACAACCCAGATTTTAGGAGAAAAGTTCTTCTTGGAGAGGTCCA ACCTGAGAGGCTTGTTACCATGGGCCCTGAAGAAATGGCAAGTGAACAAAGGAAGCGAGAGAATAACCAAATTAAAGAGAAAGTGTTGTTTGATTGTGAG CGTAGTGGTCAAGCACAAGCCACAACTGATCAGTTTAAGTGTGGTCGTTGTAGACAGCGCAAATGCACTTACTATCAGATGCAGACCAGGAGTGCAGATG AACCTATGACAACATATGTAACATGTGTAAACTGCAACAACCATTGGAAATTCTGCTAA
AA sequence Show only first row Show all	>Potri.006G109300.3 pacid=42767732 polypeptide=Potri.006G109300.3.p locus=Potri.006G109300 ID=Potri.006G109300.3.v4.1 annot-version=v4.1 MEMEFVELFDEAKKAADASLNDDVWSSGPEVTRCVDSLKQLRKFKVTSELLVSTQVGKKLRPLAKHPKEKIRAVASDLLEMWKKMVIDETRKKNGSIDSK SSVKAEVSKSETVKVEKLRKTSVVKVEKASTSETVKVEKMDQDKTVKVEKMSKQEIQTSSVKQPSQSPIGPPKLKTLVKCNDALRDKIRELLAEALSKVA SEADEDIRDEVEACDPIRVAVSVESMMFEKLGRSNGAQKLKYRSIMFNIKDQNNPDFRRKVLLGEVQPERLVTMGPEEMASEQRKRENNQIKEKVLFDCE RSGQAQATTDQFKCGRCRQRKCTYYQMQTRSADEPMTTYVTCVNCNNHWKFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Potri.006G109300 [exp]	0	1
AT2G20560			DNAJ heat shock family protein...		Potri.017G016100 [exp]	9.38	0.8410
AT1G80780			Polynucleotidyl transferase, r...		Potri.003G181100 [exp]	21.35	0.7301
AT1G53190			RING/U-box superfamily protein...		Potri.011G097100 [exp]	26.45	0.7842
AT2G43810			Small nuclear ribonucleoprotei...		Potri.010G178700 [exp]	26.64	0.8229
AT4G34630			unknown protein		Potri.009G121700 [exp]	32.74	0.8157
AT1G12530			unknown protein		Potri.003G118900 [exp]	32.86	0.7759
AT2G31670			Stress responsive alpha-beta b...		Potri.001G413500 [exp]	33.46	0.8292
AT5G40190			RNA ligase/cyclic nucleotide p...		Potri.001G350300 [exp]	40.39	0.7797
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Potri.006G110100 [exp]	44.19	0.8135
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Potri.010G223100 [exp]	47.32	0.7824

Compare expression of checked genes

Potri.006G109300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.