Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01920 597 / 0 STN8 State transition 8, Protein kinase superfamily protein (.1) AT1G68830 224 / 9e-67 STN7 STT7 homolog STN7 (.1) AT1G12680 57 / 1e-08 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT1G03740 57 / 3e-08 Protein kinase superfamily protein (.1.2) AT3G07980 57 / 3e-08 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT4G08470 56 / 6e-08 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G29810 55 / 6e-08 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT4G08500 55 / 8e-08 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT5G63370 54 / 2e-07 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT1G54610 54 / 2e-07 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138500 [exp] 833 / 0 AT5G01920 596 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Potri.008G116800 [exp] 225 / 7e-67 AT1G68830 883 / 0.0 STT7 homolog STN7 (.1) Potri.010G129532 [exp] 124 / 5e-33 AT1G68830 296 / 1e-98 STT7 homolog STN7 (.1) Potri.005G251500 [exp] 59 / 5e-09 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.017G048400 [exp] 58 / 7e-09 AT1G12680 471 / 7e-164 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.007G112400 [exp] 58 / 1e-08 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.019G073100 [exp] 57 / 2e-08 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G172200 [exp] 55 / 9e-08 AT4G08500 421 / 6e-141 MAPK/ERK kinase kinase 1 (.1) Potri.002G088900 [exp] 54 / 1e-07 AT4G08500 411 / 4e-137 MAPK/ERK kinase kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014183 [exp] 611 / 0 AT5G01920 651 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10022730 [exp] 526 / 0 AT5G01920 530 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10034273 [exp] 218 / 1e-64 AT1G68830 832 / 0.0 STT7 homolog STN7 (.1) Lus10041490 [exp] 145 / 1e-37 AT1G68830 754 / 0.0 STT7 homolog STN7 (.1) Lus10002469 [exp] 60 / 3e-09 AT1G71530 429 / 3e-143 Protein kinase superfamily protein (.1.2) Lus10036464 [exp] 59 / 5e-09 AT1G12680 607 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10034726 [exp] 59 / 6e-09 AT1G18670 782 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10021642 [exp] 57 / 2e-08 AT1G18670 736 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10041132 [exp] 57 / 2e-08 AT1G12680 608 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10000584 [exp] 57 / 3e-08 AT1G53050 429 / 1e-142 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G109700.6 pacid=42768342 polypeptide=Potri.006G109700.6.p locus=Potri.006G109700 ID=Potri.006G109700.6.v4.1 annot-version=v4.1 ATGGCTTCTCTGATATCACCTATGACACCTGCACTTCAGCAGAATCCTAAAATTATTTGCTTTTCTGCTTTCAAGCCTCCTTTGCATCATGATACACCTT CTTTCACTGACCGTTTGAGAAGTAACCCAGGCAGGTGTAAAGCATTTTTCGGCAACATTCCAGATGATTTATTGGAGAACACTCTTCAACTGGACCAATT CCCAGCTTTTCAATCTGGGTTGGTGCAATTTCAGAGTGTTACTGAGGAACTGTCAGATACGCAGAAATGGGGTCTTCTGGTTTTTGCTGGGGTGGCATGG ATTTATTTAACTGCAAGGCCTGGTATTCTCATAGGTGCCATCGATGCATACCTTCTTGCTCCTCTGCAACTTGGTTTGGACAGTTTGACTGGAAGGAGGA ACTTGAAGAGGAGTGATTTTCTGGTTGGGGATAAACTGGGAGAAGGTTCTTTTGGTGTTGTCTATTCTGGGGTGGTTGTTCCAAGGAATGCAACTGTAGA GGAGAAGGTGCCGAAGAGGGGAACTGGAAGAGCATTACAGTTGGATGAGAGGTTCAAAGAAAAGGTCATACTAAAAAAGGTGAAGGTAGGAATCACAGGG GCAGAACAATTCGGCGAAGTTGAGGAGTGGTTTAATTACAGGCTGTCAAGAGCAGCTCCTGAAACATGTGCTAAGTTCCTTGGAAGTTTTGTAGCTGATC AAACGAGTTCCCAATTTACAAAGGGTGGAAAATGGCTTGTTTGGAAATTTGAGGGAGATCGAACCCTTGGTGATTACATGAAAGATCGTAACTTCCCTTT TAACTTAGAGTCTGTCATGTTTGGGCGTGTCTTGCAAGGAGTTGTTTCTGTTAAACGAAGTGCATTGATCATCAAGCAAGTAATGCGCCAGATTATTACT TCACTTAAGAAAATCCATGATACTGGGATTGTTCACAGGGACGTAAAGCCAGCTAATTTAGTGGTGACAAAGAAGGGACAGGTTAAGCTCATAGATTTTG GGGCGGCCACTGACCTCCGGATTGGCAAGAACTACATACCTGACCAAAGTCTGCTTGATCCGGACTATTGTCCACCAGAACTATTTGTGCTCCCAGAGGA GACACCAAGTCCTCCACCTGAGCCGGTTGCTGCCCTTCTTTCTCCAGTTATATGGCAGTTAAACAGTCCTGATCTATTTGATACGTACTCTGCTGGGATT GTTCTCCTGCAAATGGCAATACCAAGCTTAAGGCCTGTATCAGGCTTAAAGAATTTCAATACAGAAATAAAGAAAGCTAGATATGACTTGAATAAATGGA GGGAGAGCACTCGATTGAGGCCTGACTTGACAATTCTTGAACTTGACTCGGGTAGAGGGTGGGATCTAGCTACAAAATTGATTTCAGAGAGAGGTTATCT TGGAAGGGGACGTTTATCAGCTGCTGCTGCTCTAAGGCATCCTTATTTCTTGTTGGGTGGTGATCAGGCAGCTGCAGTTCTTTCAAAGTTTAGCTTAATC AAATAG
AA sequence Show only first row Show all	>Potri.006G109700.6 pacid=42768342 polypeptide=Potri.006G109700.6.p locus=Potri.006G109700 ID=Potri.006G109700.6.v4.1 annot-version=v4.1 MASLISPMTPALQQNPKIICFSAFKPPLHHDTPSFTDRLRSNPGRCKAFFGNIPDDLLENTLQLDQFPAFQSGLVQFQSVTEELSDTQKWGLLVFAGVAW IYLTARPGILIGAIDAYLLAPLQLGLDSLTGRRNLKRSDFLVGDKLGEGSFGVVYSGVVVPRNATVEEKVPKRGTGRALQLDERFKEKVILKKVKVGITG AEQFGEVEEWFNYRLSRAAPETCAKFLGSFVADQTSSQFTKGGKWLVWKFEGDRTLGDYMKDRNFPFNLESVMFGRVLQGVVSVKRSALIIKQVMRQIIT SLKKIHDTGIVHRDVKPANLVVTKKGQVKLIDFGAATDLRIGKNYIPDQSLLDPDYCPPELFVLPEETPSPPPEPVAALLSPVIWQLNSPDLFDTYSAGI VLLQMAIPSLRPVSGLKNFNTEIKKARYDLNKWRESTRLRPDLTILELDSGRGWDLATKLISERGYLGRGRLSAAAALRHPYFLLGGDQAAAVLSKFSLI K

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01920		STN8	State transition 8, Protein ki...		Potri.006G109700 [exp]	0	1
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Potri.010G255500 [exp]	1.00	0.9889
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.008G172100 [exp]	1.41	0.9864	RNP1.2
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.017G118900 [exp]	2.00	0.9817
AT3G23700			Nucleic acid-binding proteins ...		Potri.014G148500 [exp]	3.74	0.9790
AT1G35340			ATP-dependent protease La (LON...		Potri.013G105500 [exp]	4.47	0.9794
AT1G67280			Glyoxalase/Bleomycin resistanc...		Potri.006G160600 [exp]	4.47	0.9768
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.008G101100 [exp]	6.70	0.9834
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Potri.006G183900 [exp]	6.92	0.9791
AT2G25080		ATGPX1	glutathione peroxidase 1 (.1)		Potri.006G265400 [exp]	9.48	0.9725
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Potri.004G053400 [exp]	9.79	0.9769	Pt-CHLI1.1

Compare expression of checked genes

Potri.006G109700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.