Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 1257 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 818 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 817 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 730 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 713 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 651 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT1G30570 631 / 0 HERK2 hercules receptor kinase 2 (.1) AT3G46290 613 / 0 HERK1 hercules receptor kinase 1 (.1) AT4G39110 610 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 609 / 0 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138700 [exp] 1523 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 897 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 881 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.013G042500 [exp] 837 / 0 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 832 / 0 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 829 / 0 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 828 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 826 / 0 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 813 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014185 [exp] 1230 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 1158 / 0 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 785 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 731 / 0 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 726 / 0 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10032971 [exp] 682 / 0 AT3G51550 706 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 676 / 0 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 662 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10028140 [exp] 644 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10003942 [exp] 644 / 0 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.006G110000.1 pacid=42769343 polypeptide=Potri.006G110000.1.p locus=Potri.006G110000 ID=Potri.006G110000.1.v4.1 annot-version=v4.1 ATGGATAAGTGTTTCTATGTTTCCGTTTATGTTTCTCTTTGCTTGTTATCTTCTATTCAAGTTATTTTTGCTGCAAATTATGTTCCCACCGAGAAAATCC TCCTAGATTGTGGGGCGAATTCCGATCAGTCCGATTCAGATGGTCGGGATTGGACCTCAGATAGGGGTTCTTCATTTTTGTCTTCGTCTACAAATTCATC CACAGCCACTGCTTCCACTCAAGACCCTTCTGTTCCCCAAGTTCCGTATCTAACAGCACGTATTTTTCGGTCCAGTTTTACCTATAGTTTTCCAGTGGTT TCTGGTCGTAAATTCATTCGTTTGTATTTCTATCCTTCTTCATATAGTGGGCTTAATGCTTCCAATGCTCTCTTTTCTGTTACTGCTGGGTCTTATACAC TTCTTAGCAATTTTAGTGTTGCTCAAACCGCAGAAGCTTTGAATTATGTTTCGATTATGAAGGAGTATTTGGTCAATGTGGATGGTGATACATTGAAGAT AACTTTCAGTCCGTCTTCAAATCCTTCGAGTGCTTATGCATTTGTAAATGGAATTGAAATCGTGTCAATGCCTGACATTTATAGCAATGTTGATGGGGTG ATGATTGTCGGCCAAGATGCCCCGTTTACCATTTACAATACTACTGCCCTTGAGAATGTATATAGGTTAAATGTGGGAGGTAATAGCATTACACCCTCTG CCGATACAGGTCTATTTCGGTCGTGGTCTGATGATCAGATATATCTTTACGGGGCAGCGTATGGTCTTACACAGAGTGCTGATCCAAATATGACAATTAG ATATCCTGCAGGGATGTCCTCTTATGTTGCCCCAAGTGACGTGTATGCTACTGCTAGATCCATGGGAACAGATCCTCGCATCAACATGAATTACAATTTG ACTTGGGTTTTTAGCGTGGATTCCAATTTCAATTACTTGGTTAGGCTACATTTCTGTGAGGTTTCGAATATAACCAAGGTTAACCAGCAAGTGTTTGACA TCTTCCTCAATAATCAAACTGCTGAAGATGGAGCGGATGTGATTGCCTGGGCAGGGGGGAATGGGAACAATGGAGTTCCAGTCTATAAAGATTACGTGGT GCTAGTTCCTGGTGGACCTCCTCAGCAGGATATGTGGCTTGGTCTTCATCCTAATCCGAAGTCAAAGCCCCAGTATTATGATGCAATCTTAAATGGTGTA GAGATTTTCAAGTTAAGCAATCCAAATGATGGTAATCTTGCTGGACCAAATCCAATCCCTGCTCCTAAACAGGAGGAAATTGACCCCATAAAGGCCAGAC CAGGATCTGGCTCTGGTCAATCAAAGAGCCAAACAGCAATTATAGCTGGAGGTGTGAGTGGTGGAGTTGTTCTAGCTATTGTCATTGGTTTCTGTGTTCT TGCTGCATCACGCCGCCGCCATAGACATAGAAAGGAGCCAAGTTCAAGTGACGGGCCATCTGGGTGGCTTCCTCTTTCTCTTTATGGAAATTCACATTCT GCTAGTTCGGCCAAGACAAATACTACAGGAAGTTATGTTTCCTCCCTGCCTTCAAACCTTTGCCGCCACTTCTCATTTGCTGAGATCAAGGCTGCCACCA AGAACTTTGATGAGGCTTTGATCCTTGGGGTGGGAGGTTTTGGTAAAGTTTACAAGGGAGAAATTGATGGTGGAACAACTAAAGTTGCGATCAAGCGTGG TAATCCACTCTCTGAGCAAGGAGTGCATGAGTTCCAGACTGAGATTGAAATGCTCTCAAAACTTCGACACCGCCACCTTGTTTCATTGATTGGGTACTGC GAAGAGAATACTGAGATGATCCTTGTTTATGACCACATGGCTTACGGAACATTGCGTGAACATCTATACAAAACCCAAAAGCCCCCTCTGCCATGGAAGC AAAGACTTGAGATATGCATTGGGGCTGCTCGTGGTTTGCACTATCTCCACACTGGTGCAAAGTACACTATCATCCACCGTGATGTCAAGACAACAAACAT TCTTTTGGATGAGAAGTGGGTTGCTAAGGTCTCTGATTTTGGGTTGTCAAAAACAGGCCCTACTTTGGATCACACTCATGTCAGCACTGTTGTCAAAGGT AGTTTCGGCTATCTGGATCCAGAGTACTTCAGGAGGCAGCAACTAACTGAAAAATCCGATGTATACTCTTTTGGAGTTGTGCTTTTTGAGATACTTTGTG CTCGACCAGCCTTGAACCCAACGCTGCCCAAGGAACAGGTGAGCCTGGCAGAATGGGCTGCTCATTGCCATAAGAAAGGCATTCTTGATCAGATTCTTGA TCCCTATCTGAAGGGGAAGATTGCACCAGAATGCTTCAAAAAGTTTGCCGAGACTGCAATGAAGTGCGTCTCTGATGAAAGCATTGACAGGCCATCAATG GGAGACGTACTCTGGAACCTAGAGTTTGCCTTGCAGCTACAAGAGAGTGCAGAGGACGGTGCCAAGGGTATTGTCGGAGTAGACGAGGAGGTGCCGTTCA ATGTTGCCTATAAAGGGAAGAAAGATCCCGATGCATCCCCTGGTTATGATGGTAATGTAACAGATTCAAGGAGCAGTGGAATCAGTATGAGCATAGGCGG TCGGAGCCTCGCCAGTGAAGACTCTGATGGCTTAACTCCAAGCGCTGTTTTCTCACAGATCATGAACCCGAAAGGAAGATGA
AA sequence Show only first row Show all	>Potri.006G110000.1 pacid=42769343 polypeptide=Potri.006G110000.1.p locus=Potri.006G110000 ID=Potri.006G110000.1.v4.1 annot-version=v4.1 MDKCFYVSVYVSLCLLSSIQVIFAANYVPTEKILLDCGANSDQSDSDGRDWTSDRGSSFLSSSTNSSTATASTQDPSVPQVPYLTARIFRSSFTYSFPVV SGRKFIRLYFYPSSYSGLNASNALFSVTAGSYTLLSNFSVAQTAEALNYVSIMKEYLVNVDGDTLKITFSPSSNPSSAYAFVNGIEIVSMPDIYSNVDGV MIVGQDAPFTIYNTTALENVYRLNVGGNSITPSADTGLFRSWSDDQIYLYGAAYGLTQSADPNMTIRYPAGMSSYVAPSDVYATARSMGTDPRINMNYNL TWVFSVDSNFNYLVRLHFCEVSNITKVNQQVFDIFLNNQTAEDGADVIAWAGGNGNNGVPVYKDYVVLVPGGPPQQDMWLGLHPNPKSKPQYYDAILNGV EIFKLSNPNDGNLAGPNPIPAPKQEEIDPIKARPGSGSGQSKSQTAIIAGGVSGGVVLAIVIGFCVLAASRRRHRHRKEPSSSDGPSGWLPLSLYGNSHS ASSAKTNTTGSYVSSLPSNLCRHFSFAEIKAATKNFDEALILGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYC EENTEMILVYDHMAYGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKG SFGYLDPEYFRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCHKKGILDQILDPYLKGKIAPECFKKFAETAMKCVSDESIDRPSM GDVLWNLEFALQLQESAEDGAKGIVGVDEEVPFNVAYKGKKDPDASPGYDGNVTDSRSSGISMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	0	1
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G087500 [exp]	1.00	0.8376	ATH.1
AT1G12460			Leucine-rich repeat protein ki...		Potri.003G117500 [exp]	3.46	0.7913
AT1G57680			unknown protein		Potri.003G003500 [exp]	4.00	0.7381
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200200 [exp]	5.91	0.7770
AT1G10020			Protein of unknown function (D...		Potri.009G084000 [exp]	7.07	0.7280
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Potri.010G213200 [exp]	7.74	0.7142
AT1G45688			unknown protein		Potri.002G124600 [exp]	8.94	0.7856
AT1G19490	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.006G114600 [exp]	9.00	0.7376
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.018G076500 [exp]	9.48	0.7609
AT1G47380			Protein phosphatase 2C family ...		Potri.002G127300 [exp]	10.48	0.6854

Compare expression of checked genes

Potri.006G110000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.