Plant FIBer expression Database

Potri.006G110400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G38580 252 / 4e-78 Mitochondrial ATP synthase D chain-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G139000
[exp]
594 / 0 AT2G38580 241 / 8e-74 Mitochondrial ATP synthase D chain-related protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021384
[exp]
278 / 1e-88 AT2G38580 187 / 3e-54 Mitochondrial ATP synthase D chain-related protein (.1)
Lus10025211
[exp]
156 / 2e-43 AT2G38580 126 / 1e-32 Mitochondrial ATP synthase D chain-related protein (.1)
PFAM info
Representative CDS sequence
>Potri.006G110400.1 pacid=42770706 polypeptide=Potri.006G110400.1.p locus=Potri.006G110400 ID=Potri.006G110400.1.v4.1 annot-version=v4.1
ATGGAGGAAGAGAAGAAGAAGAAAAGAAACAAGAAGAAGAAAAGCAAGCAGAACAACCACACCAACAATAATAAAGCATCAGAAGACGACGTGTCGGTTG
CTGCTGCTACTAATAATAATAGTAATGGGCAAAATCATGATAATGTTAATGATAATCAAGTTATAGAGGTTTCTTCAAATGGTGATGTCGTGGACGCAGA
GGATTTTAATGGACATTATGATAAACCCAATGGAGCAGCACCGCATTCTCCCTGGCTGAAAAGAGAGGCTGCTTTACAAGAGACAATCAAACATTTACAA
AATGAAACCGATTCACTCACAAGGACAAAGGATACCTTTGAAGAGACAATCAAACGATTACGAGATGAAAATGATTCACACATACAGAAAGAGGCTACCT
TAGAAGAGACAGTAAAGCAGTTACAGAATGAAAGTGCTTTGCACACGCAGAAAGAGGCATCCTTAGAAGATACAATCAATCAATTAAGAAGTGTAAACAA
TTTGTGCATACAAAAAGAGGCTACCTTTGAAGATACAATCAAACAATTGAAAACTGAAAATGATTCCCACCTGCAGAAAGAGGCTGATTTAGAGAAGAGA
ATTGTACAATTGCAGAGTGAAAAAGATTTCTGGCTTCAGAAAGAGGCTGGCTTTGGGGAGAAACTTAACCACTTACAGGATGAGAAGGCTGCTCTGGTTT
TAAAAGCTGCAAGCATAGGGGAAAAGATTAGACTATTAGAGAGTGATAAAGATTCTTGGACCATATCAGAGAATACAACCAAAGAAACCATTGCTAGAAT
GAATATCGACGTCACAAGACTACGAATGCAGGTGGTGGAGTTGGAAGATTCCAGGAATAGTCTCGTGAAAGAAAACCAACAACTGAAGGAAAGCATCTCT
AACCTGAAGTTACAGCTTCAAAACATTGATACGAGTGTCTCCTTTGCTAACACATCAGAACTCGGAAAGCTTGGCGCTGAAAAGGAGGAATTGAACTCCC
AGATCGAAGCAGCTTGTGCACTGGTAGACAAATTGATCACAGAAAATGCAGACCTTGTTGAGAAAGTGAATGAGTTGTACATTAAACTTGACCATCAAGG
GACAGCAGCTAGTTTTTCTTCAGCAACTGGAAGAGGTGTTATCGTTAGAAATTCTGAACTCGCCAATGGAACTCATCCCATGGCTGATTCAAATGCAAAC
CTGACTGCATTGGGCCATAAGCTAGAGTCCTTGGAAGTGGAACCTGCTGTGGTAGTTCAATACTCTTCAGAAGCTGGCTCTGGAGAAATTGTGCAAATCC
CATTGGATGATAATGAAGTTCCGGATTTGGAGATGCAAGCTGCTGAGACTGTCTATAAGAGTGGTGCTGTGCCCCTTACGGATGCTCCACTAATCGGAGC
TCCTTTCCGGTTAATATCATTTGTTGCAAAATATGTTAGTGGTGGTGACTTGGTCAACAGATGA
AA sequence
>Potri.006G110400.1 pacid=42770706 polypeptide=Potri.006G110400.1.p locus=Potri.006G110400 ID=Potri.006G110400.1.v4.1 annot-version=v4.1
MEEEKKKKRNKKKKSKQNNHTNNNKASEDDVSVAAATNNNSNGQNHDNVNDNQVIEVSSNGDVVDAEDFNGHYDKPNGAAPHSPWLKREAALQETIKHLQ
NETDSLTRTKDTFEETIKRLRDENDSHIQKEATLEETVKQLQNESALHTQKEASLEDTINQLRSVNNLCIQKEATFEDTIKQLKTENDSHLQKEADLEKR
IVQLQSEKDFWLQKEAGFGEKLNHLQDEKAALVLKAASIGEKIRLLESDKDSWTISENTTKETIARMNIDVTRLRMQVVELEDSRNSLVKENQQLKESIS
NLKLQLQNIDTSVSFANTSELGKLGAEKEELNSQIEAACALVDKLITENADLVEKVNELYIKLDHQGTAASFSSATGRGVIVRNSELANGTHPMADSNAN
LTALGHKLESLEVEPAVVVQYSSEAGSGEIVQIPLDDNEVPDLEMQAAETVYKSGAVPLTDAPLIGAPFRLISFVAKYVSGGDLVNR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G38580 Mitochondrial ATP synthase D c... Potri.006G110400
[exp]
0 1
AT2G20410 RNA-binding ASCH domain protei... Potri.013G045800
[exp]
4.00 0.8639
AT5G35080 unknown protein Potri.018G118200
[exp]
6.24 0.8770
AT2G38580 Mitochondrial ATP synthase D c... Potri.016G139000
[exp]
11.66 0.8700
AT3G03800 ATSYP131, SYP13... syntaxin of plants 131 (.1) Potri.019G036700
[exp]
21.14 0.8648 SYP131.2
AT4G31080 Protein of unknown function (D... Potri.006G281200
[exp]
23.36 0.8534
AT5G60710 Zinc finger (C3HC4-type RING f... Potri.016G001300
[exp]
25.29 0.8492
AT5G58000 Reticulon family protein (.1) Potri.018G108200
[exp]
29.32 0.8539
AT2G47500 P-loop nucleoside triphosphate... Potri.014G125700
[exp]
34.64 0.8392
AT5G51760 AHG1 ABA-hypersensitive germination... Potri.012G131800
[exp]
36.16 0.7714
AT1G17170 ATGSTU24 Arabidopsis thaliana Glutathio... Potri.001G436433
[exp]
38.06 0.8501

Potri.006G110400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.