Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14360 537 / 0 ATUTR3, UTR3 UDP-galactose transporter 3 (.1) AT2G02810 512 / 0 ATUTR1, UTR1 UDP-galactose transporter 1 (.1) AT3G46180 113 / 2e-28 UTR5, ATUTR5 UDP-galactose transporter 5 (.1) AT5G59740 112 / 2e-28 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT1G12600 74 / 1e-14 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT4G23010 71 / 2e-13 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139100 [exp] 556 / 0 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1) Potri.001G234800 [exp] 118 / 3e-30 AT5G59740 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.003G121000 [exp] 74 / 2e-14 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.001G111000 [exp] 72 / 6e-14 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.014G077500 [exp] 70 / 3e-13 AT1G12600 566 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030495 [exp] 551 / 0 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1) Lus10012848 [exp] 535 / 0 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1) Lus10005881 [exp] 115 / 4e-29 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10040866 [exp] 81 / 4e-17 AT5G59740 479 / 8e-172 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10029605 [exp] 75 / 9e-15 AT1G12600 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10006337 [exp] 75 / 1e-14 AT1G12600 555 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10015850 [exp] 71 / 1e-13 AT1G12600 484 / 1e-173 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10009315 [exp] 71 / 2e-13 AT1G12600 557 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF08449 [poplar] [flax] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Potri.006G110500.1 pacid=42770327 polypeptide=Potri.006G110500.1.p locus=Potri.006G110500 ID=Potri.006G110500.1.v4.1 annot-version=v4.1 ATGGAAGCACACGGAGGAGGCGGCGGAAGTGGAAGCCTCCGGCGAGTGTTAGTGTTGGCATTTTGCGTAGCCGGCATCTGGTCGGCTTATATATATCAAG GTCTTCTTCAAGAAACTCTATCGACGAAGAGATTTGGTTCAGATGGGAAGAGATTTGAGCAACTAGCATTCCTAAATCTGGCGCAAAATGTAGTTTGCTT GATATGGTCATACATGATGATAAAGATATGGTCGACGAGGAGTGGTAGCAGCAGCAGCAGCATGGGTGCTCCGTGGTGGACATACTGGAGCCCTGGCATT ACAAATACAATCGGGCCAGCCTTGGGTATTGAAGCCCTAAAGTATATCAGTTACCCTGCCCAGGTCCTGGCAAAATCATCCAAAATGATACCAGTGATGT TGATGGGTAGTCTGGTGTATGGTATAAGATACACCCTTCCTGAGTATCTTTGCACTTTCCTTGTTGCTGGAGGAGTATCCACATTTGCTCTCATGAAGAC TAGCTCGAAGACCATCAATAAACTAGCACATCCAAATGCACCCCTCGGATATGGCCTTTGTTTCTTGAACCTTGCATTTGATGGATTTACTAACGCTACT CAGGACTCACTAAAAGCCAGGTATCCAAAGACAAGCGCTTGGGATATAATGCTGGGAATGAATTTGTGGGGAACAATATACAACCTGATCTACATGTTTG GCTGGCCACACGGGATTGGATATGAGGCAATCGAATTCTGCAAGCACCATCCAGAAGCAGCATGGGACATTTTTCTCTACTGCCTTTGTGGCGCTGTGGG TCAGAATTTTATCTTTCTAACCATTAGCCGCTTTGGATCTCTAGCTAACACGACCATTACCACAACCCGCAAGTTTGTCAGCATTGTGGTTTCTTCGGTG CTGAGCGGCAATCCCCTATCAGCAAAACAATGGGGATGCGTGGTCATGGTGTTCTCTGGGTTATCATATCAGATTTATCTCAAGTGGAGAAAGTTGCAGA AACTGCAAAAGAAGAGAAAGCCTTTGTGA
AA sequence Show only first row Show all	>Potri.006G110500.1 pacid=42770327 polypeptide=Potri.006G110500.1.p locus=Potri.006G110500 ID=Potri.006G110500.1.v4.1 annot-version=v4.1 MEAHGGGGGSGSLRRVLVLAFCVAGIWSAYIYQGLLQETLSTKRFGSDGKRFEQLAFLNLAQNVVCLIWSYMMIKIWSTRSGSSSSSMGAPWWTYWSPGI TNTIGPALGIEALKYISYPAQVLAKSSKMIPVMLMGSLVYGIRYTLPEYLCTFLVAGGVSTFALMKTSSKTINKLAHPNAPLGYGLCFLNLAFDGFTNAT QDSLKARYPKTSAWDIMLGMNLWGTIYNLIYMFGWPHGIGYEAIEFCKHHPEAAWDIFLYCLCGAVGQNFIFLTISRFGSLANTTITTTRKFVSIVVSSV LSGNPLSAKQWGCVVMVFSGLSYQIYLKWRKLQKLQKKRKPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.006G110500 [exp]	0	1
AT1G22840		CYTC-1, ATCYTC-...	CYTOCHROME C-A, CYTOCHROME C-1...		Potri.019G076101 [exp]	1.41	0.9041
AT5G26594		ARR24	response regulator 24 (.1)		Potri.001G050800 [exp]	2.00	0.8711
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	2.44	0.9072
AT3G52110			unknown protein		Potri.009G061900 [exp]	3.16	0.8707
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	3.46	0.8987
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	8.36	0.8572	Pt-CYCB2.2
AT3G47610			transcription regulators;zinc ...		Potri.003G168100 [exp]	8.83	0.8526
AT1G09210		AtCRT1b	calreticulin 1b (.1)		Potri.013G009500 [exp]	10.58	0.8581
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G129400 [exp]	11.22	0.8577	CYP89A27P
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.005G198500 [exp]	13.22	0.8651

Compare expression of checked genes

Potri.006G110500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.