Plant FIBer expression Database

Potri.006G110601 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G110601.1 pacid=42768868 polypeptide=Potri.006G110601.1.p locus=Potri.006G110601 ID=Potri.006G110601.1.v4.1 annot-version=v4.1
ATGTTGTTTGAGCCAATTTCTATATTTTTCTTTCCTTTTCAAATTTATAACACAACACAAACACATAAACAACATTCTAGTTTCTTTTTCCAATCTCTTC
ATCGTCCTTCTTCCCTTCTCTCTCTTTATCTCTTCTTAGTTTCGATCAAAAGTCAAAAATGCCTTCTCCACTCTTCAAGATACCCTCTCTTCAACACTTG
TCTTTCAATGGTAAAACCCTATTCCTCTCTTCAAGCTATGCCAAATGGCTATCCAAATGATGCCCAATGGAACTCAAGAAGCCAGAGACACCCGCCCAAT
CCTCCTCATCAGTCTACCCCACAACCTGGAAACTACAATCACAATCAATGCATCCAAAATCAGCAGTACCCTCCTCCAAACCAATTTAATTATCCAAACA
GGGGGTATCAGCTGATATAA
AA sequence
>Potri.006G110601.1 pacid=42768868 polypeptide=Potri.006G110601.1.p locus=Potri.006G110601 ID=Potri.006G110601.1.v4.1 annot-version=v4.1
MLFEPISIFFFPFQIYNTTQTHKQHSSFFFQSLHRPSSLLSLYLFLVSIKSQKCLLHSSRYPLFNTCLSMVKPYSSLQAMPNGYPNDAQWNSRSQRHPPN
PPHQSTPQPGNYNHNQCIQNQQYPPPNQFNYPNRGYQLI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G110601
[exp]
0 1
Potri.013G084650
[exp]
1.41 0.8515
AT5G54130 Calcium-binding endonuclease/e... Potri.015G004200
[exp]
6.00 0.8113
AT4G18210 ATPUP10 purine permease 10 (.1) Potri.001G352100
[exp]
6.63 0.8347
AT5G65720 ATNIFS1, NIFS1 ... NITROGEN FIXATION S HOMOLOG 1,... Potri.008G005101
[exp]
13.52 0.6891
Potri.008G175950
[exp]
14.96 0.7766
AT2G41310 ARR8, ATRR3 RESPONSE REGULATOR 8, response... Potri.016G038000
[exp]
26.32 0.7809
AT2G29970 Double Clp-N motif-containing ... Potri.001G252500
[exp]
27.92 0.7326
AT1G21710 OGG1, ATOGG1 ARABIDOPSIS 8-OXOGUANINE-DNA G... Potri.005G180700
[exp]
28.77 0.6833 OGG1.1
AT3G09150 ATHY2, GUN3, HY... GENOMES UNCOUPLED 3, ARABIDOPS... Potri.001G253700
[exp]
38.65 0.7824
AT4G36920 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APE... Potri.005G140700
[exp]
38.85 0.7638 Pt-AP2.14

Potri.006G110601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.