Plant FIBer expression Database

Potri.006G110700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G08670 251 / 1e-75 unknown protein
AT3G51540 98 / 1e-21 unknown protein
AT2G40070 69 / 4e-12 unknown protein
AT3G09000 66 / 3e-11 proline-rich family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G139500
[exp]
433 / 3e-145 AT3G08670 245 / 2e-73 unknown protein
Potri.010G190300
[exp]
72 / 4e-13 AT2G40070 368 / 6e-121 unknown protein
Potri.008G066900
[exp]
72 / 5e-13 AT2G40070 321 / 1e-102 unknown protein
Potri.016G114900
[exp]
53 / 4e-07 AT2G40070 352 / 7e-114 unknown protein
Potri.010G177000
[exp]
47 / 3e-05 AT2G40070 82 / 9e-17 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021382
[exp]
260 / 2e-78 AT3G08670 432 / 4e-145 unknown protein
Lus10025209
[exp]
256 / 1e-76 AT3G08670 398 / 6e-131 unknown protein
Lus10004390
[exp]
64 / 4e-11 AT2G40070 321 / 5e-107 unknown protein
Lus10040188
[exp]
65 / 1e-10 AT2G40070 533 / 0.0 unknown protein
Lus10030402
[exp]
59 / 1e-08 AT2G40070 561 / 0.0 unknown protein
Lus10037838
[exp]
57 / 4e-08 AT2G40070 551 / 0.0 unknown protein
Lus10004824
[exp]
50 / 6e-06 AT3G09000 286 / 3e-90 proline-rich family protein (.1)
Lus10002493
[exp]
49 / 6e-06 AT2G40070 300 / 2e-95 unknown protein
Lus10027767
[exp]
45 / 0.0001 AT2G40070 288 / 5e-86 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G110700.1 pacid=42767672 polypeptide=Potri.006G110700.1.p locus=Potri.006G110700 ID=Potri.006G110700.1.v4.1 annot-version=v4.1
ATGATGAATAATAATATTAATATTATTAATAATAGTAATAATAATAATTCTAGGAGCACTAATGGGAGTTTGAGAGAATCTCTAGTGGCAGGGAGGAATA
TTCCGATGGGATCCCAGTACTACCGCCGTGGTCATAATGTGACGGGTGGCGGTGGTTTCTCTAAAAATAATAATGGCACGGACGAGAACTTGGATCTCTT
CTCCAAGAACCGCCGCGGTCTCTCTGTCTCCTCCGATGAATCTTCTGATGTTTCAGTGAAATTGGAGAGACTTGCAGTTGGCTCAGCTAAATTTGCAAGG
AGCGGGATCGATGATCTGTTATCATCCACGGAGGGAGGGAAGCATGATTATGATTGGCTTCTTACCCCCCCTGGAACTCCTCTTTCTCCTCCGTCGGAAG
GAAGTGAATCAAAACCAACTTCAGTGGCTCCACGAAGCAGTTCTTTGGCTAGATCAACTTCTACTACCAAGGCGGTTTCTAGGCTTTCAGTTTCACAATC
AGAGAGTTACCATTCCTCAAGACCAACTAGAAGCAGTTCAGTGACTCGACCTTCTATATCGTCTTCACAATACAGTACCTATTCCTCGAATAGGTCCTCT
TCAATCCTAAATACAAGCTCAGCCTCTGTCTCATCTTATACTAGACCATCCTCCCCAATAACCCGCACGCCACCTATAGCAAGACCTTCCACACCACCAG
CCCGCCCAACACCATCACGTTCCTCAACCCCGTCAAGAGTTCGACCTGCCCCCACCAGCTCATCAGTTGACAAGACTCCACCCTTCCAAAACTCGAGGCC
CTCCACTCCAAGTTCTAGGGGGCAAAGTCCTGCAAACTTTAGTGCAGCACCCACTCGATCAAATTCTCGTCCATCAACTCCTACACGTCGGAACCCAGCA
CCTTCCTCATCTGCTGCATCAAGTCCTTCAACTTCTGCTGGACGTGTTCTCTCAAATGGTCGCATTCCCGGGCCAGCATCCCGACCAAGTTCCCCGAGCC
CTCGAGTTCGGCCACCACAGCAACCAGTTATTCCTCCTGATTTTCCTCTAGACACACCTCCAAACCTCAGAACAACTTTGCAGGGGAGGCCGCTTTCTGC
AGGTAGGTCCAGGACAGGTGTTTCTTCAGCTATGAAGGGGAACCCAGAAACCATGGGCTCTTTGAATGCACCAAGAAGACATTCATCTCCAATTGTCACA
AGGGGAAGACTCACAGAGCCATCTGGAAAGGGCCGTGTGCATAGTAATGGGCATGTTGCTGATACACCTGAGCCTCGAAAGGTCTCACATGTGTCAGAAG
TAGGAATAAGACGACCAGTAAAGTCATCATCAGCTGCCTCAGATAGCACTGGGTTTGGGAGGACTATATCTAAGAAGTCTCTGGATATGGCCATCAGGCA
TATGGACATAAGAAATGGCACAGGAAGCGCTCGATCACTTTCAAGCACCACCCTCTTCCCTCAGAGCATTAGATCAACCACTCCCAAAAGCCAATCTGTC
CGTTCTCAGAGAACGCAAGAATCCATCAACAACGGAAGTTCACAAAATGGAGATGTTTTGGATGATGAAATCCACTTTAGCAGGGCTGCAGAAATCGGGC
ATGAAGCAAATGATGGGCGATACTCTGCAAAATTGAGTGACGTTGACATCTATGAAAGCTCTCGATATGATGCAATATTACTCGAGGACTTGAAGAACAC
AAACTGGTTGCACAGTATTGATGATAAATCCGATCAAGGTCCCTTCTTTGATAATGGATCTGAGTCTCTGCCTGAACCTTTCGGCCTATTGTAA
AA sequence
>Potri.006G110700.1 pacid=42767672 polypeptide=Potri.006G110700.1.p locus=Potri.006G110700 ID=Potri.006G110700.1.v4.1 annot-version=v4.1
MMNNNINIINNSNNNNSRSTNGSLRESLVAGRNIPMGSQYYRRGHNVTGGGGFSKNNNGTDENLDLFSKNRRGLSVSSDESSDVSVKLERLAVGSAKFAR
SGIDDLLSSTEGGKHDYDWLLTPPGTPLSPPSEGSESKPTSVAPRSSSLARSTSTTKAVSRLSVSQSESYHSSRPTRSSSVTRPSISSSQYSTYSSNRSS
SILNTSSASVSSYTRPSSPITRTPPIARPSTPPARPTPSRSSTPSRVRPAPTSSSVDKTPPFQNSRPSTPSSRGQSPANFSAAPTRSNSRPSTPTRRNPA
PSSSAASSPSTSAGRVLSNGRIPGPASRPSSPSPRVRPPQQPVIPPDFPLDTPPNLRTTLQGRPLSAGRSRTGVSSAMKGNPETMGSLNAPRRHSSPIVT
RGRLTEPSGKGRVHSNGHVADTPEPRKVSHVSEVGIRRPVKSSSAASDSTGFGRTISKKSLDMAIRHMDIRNGTGSARSLSSTTLFPQSIRSTTPKSQSV
RSQRTQESINNGSSQNGDVLDDEIHFSRAAEIGHEANDGRYSAKLSDVDIYESSRYDAILLEDLKNTNWLHSIDDKSDQGPFFDNGSESLPEPFGLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G08670 unknown protein Potri.006G110700
[exp]
0 1
AT3G04160 unknown protein Potri.019G029400
[exp]
3.87 0.8236
AT1G60200 splicing factor PWI domain-con... Potri.008G147100
[exp]
8.60 0.7609
AT2G39090 APC7, AtAPC7 anaphase-promoting complex 7, ... Potri.010G022100
[exp]
8.66 0.6984
AT1G02890 AAA-type ATPase family protein... Potri.002G205900
[exp]
11.13 0.7443
AT5G44180 HD Homeodomain-like transcription... Potri.017G016200
[exp]
11.18 0.7435
AT1G09910 Rhamnogalacturonate lyase fami... Potri.005G151500
[exp]
12.68 0.7340
AT4G16110 GARP ARR2 response regulator 2 (.1) Potri.014G077200
[exp]
12.96 0.7333
Potri.009G112922
[exp]
18.33 0.7546
AT1G15130 Endosomal targeting BRO1-like ... Potri.010G116400
[exp]
18.65 0.6944
AT5G55100 SWAP (Suppressor-of-White-APri... Potri.001G356800
[exp]
27.20 0.7287

Potri.006G110700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.