Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PAA1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05840 453 / 5e-164 PAA2 20S proteasome subunit PAA2 (.1.2) AT5G35590 447 / 9e-162 PAA1 proteasome alpha subunit A1 (.1) AT1G79210 160 / 1e-48 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT1G16470 159 / 3e-48 PAB1 proteasome subunit PAB1 (.1.2) AT3G51260 147 / 3e-43 PAD1 20S proteasome alpha subunit PAD1 (.1.2) AT5G66140 144 / 2e-42 PAD2 proteasome alpha subunit D2 (.1) AT1G53850 139 / 2e-40 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT3G14290 138 / 4e-40 PAE2 20S proteasome alpha subunit E2 (.1) AT3G22110 138 / 8e-40 PAC1 20S proteasome alpha subunit C1 (.1) AT1G47250 131 / 7e-37 PAF2 20S proteasome alpha subunit F2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139600 [exp] 498 / 0 AT2G05840 459 / 2e-166 20S proteasome subunit PAA2 (.1.2) Potri.006G140400 [exp] 494 / 2e-180 AT2G05840 463 / 7e-168 20S proteasome subunit PAA2 (.1.2) Potri.012G123550 [exp] 160 / 2e-48 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 160 / 2e-48 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.009G133800 [exp] 150 / 9e-45 AT5G66140 409 / 2e-146 proteasome alpha subunit D2 (.1) Potri.004G174200 [exp] 148 / 1e-43 AT3G51260 406 / 2e-145 20S proteasome alpha subunit PAD1 (.1.2) Potri.006G008800 [exp] 139 / 2e-40 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.016G015400 [exp] 138 / 9e-40 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.003G072500 [exp] 135 / 5e-39 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027669 [exp] 472 / 3e-171 AT2G05840 473 / 1e-171 20S proteasome subunit PAA2 (.1.2) Lus10039932 [exp] 460 / 3e-166 AT2G05840 458 / 1e-165 20S proteasome subunit PAA2 (.1.2) Lus10017135 [exp] 159 / 6e-48 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10036210 [exp] 157 / 2e-47 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10042145 [exp] 142 / 3e-41 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10041890 [exp] 141 / 4e-41 AT5G66140 442 / 9e-160 proteasome alpha subunit D2 (.1) Lus10018318 [exp] 145 / 2e-39 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004235 [exp] 135 / 3e-39 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10007396 [exp] 132 / 2e-37 AT5G42790 442 / 8e-159 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10024269 [exp] 131 / 5e-37 AT5G42790 440 / 4e-158 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [poplar] [flax] NTN PF00227 [poplar] [flax] Proteasome Proteasome subunit CL0052 [poplar] [flax] NTN PF10584 [poplar] [flax] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Potri.006G110800.1 pacid=42770184 polypeptide=Potri.006G110800.1.p locus=Potri.006G110800 ID=Potri.006G110800.1.v4.1 annot-version=v4.1 ATGAGTAGAGGAAGCGGAGGTGGATATGATCGGCATATCACTATATTCTCCCCTGAAGGTCGCCTCTTTCAAGTCGAGTATGCGTTCAAGGCAGTGAAGG CTGCTTCCACCACTTCCATTGGAGTTCGCGGCAGCGATTCTGTCTGTGTTGTTACTCAAAAGAAGGTTCCGGACAAGCTTTTGGATCAGACTAGTGTTAC TCACCTTTTCTCTATTACCAAGTTTCTTGGTCTACTCGCCACCGGCATGACTGCTGATGCAAGGAACTTAGTCCAACAAGCAAGGAATGAAGCGGCGGAG TTTAGGTTCAGATATGGGTATGAAATGCCTGTCGATGCATTAGCCAGATGGATCGCAGACAAATCACAAGTTTATACTCAGCATGCATATATGAGACCTC TTGGAGTTGTTGCTATGATTTTGGGTATTGATGAAGAGAACGGGCCTCAACTTTACAAGTGTGATCCAGCTGGACACTATTTTGGTCACAAGGCTACAAG TGCTGGATTGAAAGAACAAGAGGCTATCAATTTCCTGGAAAAGAAAATGAAAAATGACCCTTCTCTCTCCTATGAGGAAACTGTGCAGACTGCTATTTCT GCTCTGCAATCTGTTCTTCAAGAGGATTTCAAGGCTACTGAGATAGAGGTGGGAGTTGTGAGAACAGGTGATCGTATTTTCAGAGTGCTGTCCACTGAGG AAATTGATGAACATTTAACTGCCATTAGTGAACGTGACTGA
AA sequence Show only first row Show all	>Potri.006G110800.1 pacid=42770184 polypeptide=Potri.006G110800.1.p locus=Potri.006G110800 ID=Potri.006G110800.1.v4.1 annot-version=v4.1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAASTTSIGVRGSDSVCVVTQKKVPDKLLDQTSVTHLFSITKFLGLLATGMTADARNLVQQARNEAAE FRFRYGYEMPVDALARWIADKSQVYTQHAYMRPLGVVAMILGIDEENGPQLYKCDPAGHYFGHKATSAGLKEQEAINFLEKKMKNDPSLSYEETVQTAIS ALQSVLQEDFKATEIEVGVVRTGDRIFRVLSTEEIDEHLTAISERD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.006G110800 [exp]	0	1	PAA1.3
AT1G51060		HTA10	histone H2A 10 (.1)		Potri.011G131400 [exp]	4.24	0.8110	HTA901
AT4G07390			Mannose-P-dolichol utilization...		Potri.014G023800 [exp]	7.48	0.8345
AT3G12260			LYR family of Fe/S cluster bio...		Potri.001G029900 [exp]	9.05	0.8488
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Potri.001G061400 [exp]	12.64	0.8558
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.018G056600 [exp]	28.63	0.8337
AT3G05000			Transport protein particle (TR...		Potri.005G044300 [exp]	29.29	0.7779
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Potri.003G053400 [exp]	31.41	0.7664
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.008G155500 [exp]	32.51	0.8265	Pt-PBD2.3
AT1G04850			ubiquitin-associated (UBA)/TS-...		Potri.001G316400 [exp]	38.88	0.7891
AT1G09690			Translation protein SH3-like f...		Potri.001G071100 [exp]	40.34	0.8069	RPL21.2

Compare expression of checked genes

Potri.006G110800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.